Miyakogusa Predicted Gene

Lj0g3v0046959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0046959.1 tr|E9PZF0|E9PZF0_MOUSE Nucleoside diphosphate
kinase OS=Mus musculus GN=Gm20390 PE=3 SV=1,51.22,0.0001,no
description,Nucleoside diphosphate kinase; NDK,Nucleoside diphosphate
kinase; NDP_KINASES,Nucleos,
NODE_57829_length_937_cov_127.798294.path1.1
         (79 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099450.1 | nucleoside diphosphate kinase-like protein | H...   157   2e-39
Medtr8g007235.1 | nucleoside diphosphate kinase-like protein | H...    93   7e-20
Medtr4g104030.1 | nucleoside diphosphate kinase-like protein | H...    92   1e-19

>Medtr8g099450.1 | nucleoside diphosphate kinase-like protein | HC |
           chr8:41955037-41951647 | 20130731
          Length = 234

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/79 (91%), Positives = 76/79 (96%)

Query: 1   MVWEGQGAISYGRKLIGATDPQKSEPGTIRGDLAVIVGRNIIHGSDGPETAKDEVNLWFK 60
           MVWEGQG I YGRKLIGATDPQKSEPGTIRGDLAV+VGRNIIHGSDGPETAKDE+NLWFK
Sbjct: 156 MVWEGQGVIVYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFK 215

Query: 61  PEELVNFTSNAEKWVYGSN 79
           PEELV+FTSN+EKWVYG N
Sbjct: 216 PEELVSFTSNSEKWVYGEN 234


>Medtr8g007235.1 | nucleoside diphosphate kinase-like protein | HC |
           chr8:1369594-1366875 | 20130731
          Length = 149

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 1   MVWEGQGAISYGRKLIGATDPQKSEPGTIRGDLAVIVGRNIIHGSDGPETAKDEVNLWFK 60
           M+WEG+  ++ GRK+IGAT+P +SEPGTIRGD AV +GRN+IHGSD  E+A  E+ LWF 
Sbjct: 74  MIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAVEIGRNVIHGSDSVESANKEIGLWF- 132

Query: 61  PEELVNFTSNAEKWVY 76
           PE    + S+   W+Y
Sbjct: 133 PEGPAAWQSSLHSWIY 148


>Medtr4g104030.1 | nucleoside diphosphate kinase-like protein | HC |
           chr4:43032291-43037070 | 20130731
          Length = 230

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 1   MVWEGQGAISYGRKLIGATDPQKSEPGTIRGDLAVIVGRNIIHGSDGPETAKDEVNLWFK 60
           M WEG G +   RKLIGAT+P ++EPGTIRGD AV  GRN+IHGSD PE  + E+ LWFK
Sbjct: 154 MAWEGVGVVPSARKLIGATNPLQAEPGTIRGDFAVETGRNVIHGSDSPENGEREIALWFK 213

Query: 61  PEELVNFTSNAEKWV 75
             EL  +T     W+
Sbjct: 214 EGELCEWTPVLHPWL 228