Miyakogusa Predicted Gene

Lj0g3v0046679.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0046679.1 Non Characterized Hit- tr|I1LHG1|I1LHG1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,82.61,0.00000000000003,WD40 repeats,WD40 repeat;
WD_REPEATS_2,WD40 repeat; WD_REPEATS_REGION,WD40-repeat-containing
domain;,NODE_53714_length_1078_cov_116.121521.path1.1
         (291 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g079820.1 | transducin/WD40 repeat protein | HC | chr8:342...   563   e-161
Medtr5g017810.1 | transducin/WD-like repeat-protein | HC | chr5:...   531   e-151

>Medtr8g079820.1 | transducin/WD40 repeat protein | HC |
           chr8:34235279-34253775 | 20130731
          Length = 1616

 Score =  563 bits (1452), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 264/291 (90%), Positives = 278/291 (95%)

Query: 1   MEWTTLQHLDLRHIGRGVRPLQPHAACFHHHQALVAVAIGTYIVELDALTGSKISALGVG 60
           MEW+TLQHLDLRHIGRGVRPLQPHAA FH HQALVAVAIGTYIVE DALTGSKISAL +G
Sbjct: 1   MEWSTLQHLDLRHIGRGVRPLQPHAASFHPHQALVAVAIGTYIVEFDALTGSKISALDIG 60

Query: 61  APVVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKTEQISSDSEVHMALTP 120
           AP VRM+YSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKK+EQISSD+EVHMALTP
Sbjct: 61  APAVRMAYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKSEQISSDTEVHMALTP 120

Query: 121 LQPVVFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPILYVAYAEGLIR 180
           LQPVVFFGFHKRMSVTVVGTVEGGR PTKIK DLKK IVNLACHPRLP+LYVAYAEGLIR
Sbjct: 121 LQPVVFFGFHKRMSVTVVGTVEGGRTPTKIKPDLKKAIVNLACHPRLPVLYVAYAEGLIR 180

Query: 181 AYNIQSYAIHYTLQLDNTIKLVGAGAFAFHPTLEWVFVGDRRGTLLAWDVSTERPSMIGI 240
           AYNI +YA+HYTLQLDNTIKL+GAGAFAFHPTLEW+FVGDR+GTLLAWDVSTERPSMIGI
Sbjct: 181 AYNIHTYAVHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRQGTLLAWDVSTERPSMIGI 240

Query: 241 KQVGSQPIKSVAWLPMLRLLVTLSKDGNLQVWETRITVNPNRPPMAANFFE 291
           KQVGSQPIKSVA+LP LRLLVTLSKDGNLQVWETR+TVNPNRP   A+FFE
Sbjct: 241 KQVGSQPIKSVAFLPTLRLLVTLSKDGNLQVWETRVTVNPNRPSTQASFFE 291


>Medtr5g017810.1 | transducin/WD-like repeat-protein | HC |
           chr5:6583166-6575605 | 20130731
          Length = 740

 Score =  531 bits (1369), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 243/291 (83%), Positives = 270/291 (92%)

Query: 1   MEWTTLQHLDLRHIGRGVRPLQPHAACFHHHQALVAVAIGTYIVELDALTGSKISALGVG 60
           MEWTTLQHLDLRH+G GV P QPHAACFH HQAL+AVAIGTYIVE DALTGSKISAL +G
Sbjct: 1   MEWTTLQHLDLRHVGHGVVPFQPHAACFHSHQALIAVAIGTYIVEFDALTGSKISALDIG 60

Query: 61  APVVRMSYSPTSGHTVIAILQDCTIRSCDFDLEQTCVLHSPEKKTEQISSDSEVHMALTP 120
           APVVRM+YSPTS HTV+AILQDCT+RSCDFDLEQTCVLHSP+KK++++ S++EVH+A+TP
Sbjct: 61  APVVRMAYSPTSAHTVVAILQDCTLRSCDFDLEQTCVLHSPDKKSDKVYSETEVHLAMTP 120

Query: 121 LQPVVFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPILYVAYAEGLIR 180
           LQ VVFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLP+LYVAYA+GLIR
Sbjct: 121 LQQVVFFGFHKRMSVTVVGTVEGGRAPTKIKTDLKKPIVNLACHPRLPVLYVAYADGLIR 180

Query: 181 AYNIQSYAIHYTLQLDNTIKLVGAGAFAFHPTLEWVFVGDRRGTLLAWDVSTERPSMIGI 240
           AYNI +YA+HYTLQL+NTIKL GA AFAFHPTLEW+FVGDRRGTLLAWDVS E+PSMIGI
Sbjct: 181 AYNIHTYAVHYTLQLENTIKLNGACAFAFHPTLEWIFVGDRRGTLLAWDVSIEKPSMIGI 240

Query: 241 KQVGSQPIKSVAWLPMLRLLVTLSKDGNLQVWETRITVNPNRPPMAANFFE 291
            QVGSQPI SVAW+  LR+LVTLSKDGN++VW  R+ VNPNRPPM ANFFE
Sbjct: 241 TQVGSQPITSVAWVTTLRILVTLSKDGNMKVWRLRVLVNPNRPPMPANFFE 291