Miyakogusa Predicted Gene
- Lj0g3v0045219.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0045219.1 Non Characterized Hit- tr|I3T6Q6|I3T6Q6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,74.8,0,SPERMIDINE_SYNTHASE_1,Spermidine/spermine synthases
family; NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SU,gene.g3291.t1.1
(385 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g069455.1 | NADH-ubiquinone oxidoreductase 39 kDa subunit ... 327 1e-89
Medtr5g034470.2 | spermidine synthase | HC | chr5:14952706-14957... 65 1e-10
Medtr5g034470.1 | spermidine synthase | HC | chr5:14952637-14957... 65 1e-10
Medtr8g063940.1 | spermidine synthase | HC | chr8:26823287-26817... 64 2e-10
Medtr3g078190.1 | spermidine synthase | HC | chr3:35216944-35220... 62 8e-10
Medtr5g006140.1 | thermospermine synthase ACAULIS protein | HC |... 54 3e-07
Medtr5g006140.2 | thermospermine synthase ACAULIS protein | HC |... 53 5e-07
Medtr1g015300.1 | thermospermine synthase ACAULIS protein | HC |... 52 1e-06
>Medtr1g069455.1 | NADH-ubiquinone oxidoreductase 39 kDa subunit |
HC | chr1:30068857-30075578 | 20130731
Length = 396
Score = 327 bits (838), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/254 (67%), Positives = 181/254 (71%), Gaps = 59/254 (23%)
Query: 130 NTICGIVATVFGATGFLGRYVVQHLAKMGSQVLVPFRGSEDCHRHLKLMGDLGQI----- 184
+++ GIVATVFGATGFLGRYVVQ LAKMGSQVLVPFRGSED RHLKLMGDLGQI
Sbjct: 58 SSVSGIVATVFGATGFLGRYVVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQIVPMKF 117
Query: 185 -----------------------------------------------SKEHGGIMRFIQV 197
SKEHGGIMRFIQV
Sbjct: 118 NPRDESSVKAVMARANVVINLIGRDYETRNFSYEEVHYHMAEKLAKISKEHGGIMRFIQV 177
Query: 198 SCLGASPSSPSRMLRAKAAAEEAILRELPEATILKPATMIGTEDRILNRWAHFAKKYSFL 257
SCLGASPSS SRMLR KAAAEEA+LRELPEATI KPA MIGTEDRILNRWAHFAKKY F+
Sbjct: 178 SCLGASPSSSSRMLRCKAAAEEAVLRELPEATIFKPAVMIGTEDRILNRWAHFAKKYGFI 237
Query: 258 PLFGDGSTKIQPVYVVDVANALTAALKDDGTSMGKVYELGGPE-------AELMYEVIRE 310
PL G+G+TKIQPVYVVDVA ALT ALKDDGTSMGK+YELGGPE AE+MY+VIRE
Sbjct: 238 PLMGNGNTKIQPVYVVDVAAALTTALKDDGTSMGKIYELGGPEIFTVHQLAEIMYDVIRE 297
Query: 311 WPRYVKVPFPIAKA 324
WPRYV VP PIAKA
Sbjct: 298 WPRYVNVPLPIAKA 311
>Medtr5g034470.2 | spermidine synthase | HC | chr5:14952706-14957807
| 20130731
Length = 349
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 39/53 (73%)
Query: 321 IAKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVEFCRQYLPNHSAG 373
I KKVL+IGGGDGG+LREVSRH VE+I + EID VV+ +Q+ P+ + G
Sbjct: 126 IPNPKKVLVIGGGDGGVLREVSRHASVEKIDICEIDKMVVDVSKQFFPDIAVG 178
>Medtr5g034470.1 | spermidine synthase | HC | chr5:14952637-14957856
| 20130731
Length = 343
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 39/53 (73%)
Query: 321 IAKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVEFCRQYLPNHSAG 373
I KKVL+IGGGDGG+LREVSRH VE+I + EID VV+ +Q+ P+ + G
Sbjct: 126 IPNPKKVLVIGGGDGGVLREVSRHASVEKIDICEIDKMVVDVSKQFFPDIAVG 178
>Medtr8g063940.1 | spermidine synthase | HC | chr8:26823287-26817588
| 20130731
Length = 342
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 321 IAKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVEFCRQYLPNHSAG 373
I+ KKVL+IGGGDGG+LREV+RH +E+I + EID VVE +Q+ P + G
Sbjct: 125 ISNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVG 177
>Medtr3g078190.1 | spermidine synthase | HC | chr3:35216944-35220034
| 20130731
Length = 323
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Query: 286 DGTSMGKVYELGGP-----EAELMYEVIREWPRYVKVPFPIAKAKKVLIIGGGDGGMLRE 340
+ ++ GKV+ L G + E Y+ + +P P KKVL+ GGGDGG+LRE
Sbjct: 79 ETSTYGKVFVLDGALQLTEKDECSYQEMMTHLPLCSIPNP----KKVLLFGGGDGGILRE 134
Query: 341 VSRHPGVEQITMVEIDAGVVEFCRQYLPNHSAG 373
+SRH VEQI + EID +++ ++Y P+ + G
Sbjct: 135 ISRHSSVEQIDICEIDTMLIDVYKKYFPDIAIG 167
>Medtr5g006140.1 | thermospermine synthase ACAULIS protein | HC |
chr5:786812-783809 | 20130731
Length = 328
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 302 ELMYEVIREWPRYVKVPFPIAKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVE 361
E +Y P + P P K V I+GGG+G RE+ RH ++++ M +ID VVE
Sbjct: 81 EFIYHECLVHPALLHHPMP----KNVFIMGGGEGSTARELLRHKTIDKVVMCDIDEEVVE 136
Query: 362 FCRQYL 367
FC+ YL
Sbjct: 137 FCKSYL 142
>Medtr5g006140.2 | thermospermine synthase ACAULIS protein | HC |
chr5:786812-783809 | 20130731
Length = 262
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 302 ELMYEVIREWPRYVKVPFPIAKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVE 361
E +Y P + P P K V I+GGG+G RE+ RH ++++ M +ID VVE
Sbjct: 81 EFIYHECLVHPALLHHPMP----KNVFIMGGGEGSTARELLRHKTIDKVVMCDIDEEVVE 136
Query: 362 FCRQYL 367
FC+ YL
Sbjct: 137 FCKSYL 142
>Medtr1g015300.1 | thermospermine synthase ACAULIS protein | HC |
chr1:3769235-3765574 | 20130731
Length = 337
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 322 AKAKKVLIIGGGDGGMLREVSRHPGVEQITMVEIDAGVVEFCRQYL 367
+ K V I+GGG+G RE +H +E++ M +ID VV+FCR+YL
Sbjct: 104 SNPKTVFIMGGGEGSAAREALKHKSMEKVVMCDIDKEVVDFCRKYL 149