Miyakogusa Predicted Gene

Lj0g3v0044679.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0044679.1 Non Characterized Hit- tr|D8T4H1|D8T4H1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,38.03,0.000000000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL,4676_g.1
         (213 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090110.1 | TFIIH basal transcription factor complex subun...   258   2e-69
Medtr6g071555.1 | TFIIH basal transcription factor complex subun...   251   4e-67

>Medtr1g090110.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr1:40358314-40346004 | 20130731
          Length = 586

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 151/200 (75%), Gaps = 25/200 (12%)

Query: 34  LFLKDGEILQVEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKEIPEAQHPLYRR 93
           +FLKD EIL+ EARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKE  EAQ+ LYRR
Sbjct: 259 VFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRR 318

Query: 94  TLLQDLNRQGALVLEGKTLDIMEMEH-----------IHESVGVREEARRNIFSKMTQIE 142
           TLLQDLNRQ  +VLEGKTLDI +MEH            HES GV EE RRN  SKM QIE
Sbjct: 319 TLLQDLNRQSEVVLEGKTLDI-DMEHPRTAVEALARRKHESDGVVEE-RRNRISKMAQIE 376

Query: 143 DLQAQDNHPFAPLCVKDPRDYFGSQQANV-----------EQTRGSLGSDKEAYGYLRAS 191
           DLQAQD+HPFAPLC+KDPRDYF SQQAN            E+ R +LGS+ EAYG LR S
Sbjct: 377 DLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSGKEKIRCNLGSE-EAYGSLRES 435

Query: 192 ISKIKAKGLKDPLLSSEIAL 211
           IS IK  GL+DPLLS E+A 
Sbjct: 436 ISNIKTMGLRDPLLSHEVAF 455


>Medtr6g071555.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr6:26537866-26536124 | 20130731
          Length = 580

 Score =  251 bits (641), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 135/200 (67%), Positives = 148/200 (74%), Gaps = 25/200 (12%)

Query: 34  LFLKDGEILQVEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKEIPEAQHPLYRR 93
           +FLKD EIL+ EARKKVRR+DPTLDMEADQGDDYTHLPDHGIFRDG KE  EAQ+ LYRR
Sbjct: 260 VFLKDDEILKNEARKKVRRIDPTLDMEADQGDDYTHLPDHGIFRDGCKETSEAQNTLYRR 319

Query: 94  TLLQDLNRQGALVLEGKTLDIMEMEH-----------IHESVGVREEARRNIFSKMTQIE 142
           TLLQDLNRQ  +VLEGKTLDI +MEH            HES GV EE RRN  SK  QIE
Sbjct: 320 TLLQDLNRQSEVVLEGKTLDI-DMEHPRTEVEVLARRKHESDGVVEE-RRNRISKTAQIE 377

Query: 143 DLQAQDNHPFAPLCVKDPRDYFGSQQANV-----------EQTRGSLGSDKEAYGYLRAS 191
           DLQAQDNHPF PLC+KDPRDYF SQQANV           E+ R +LGS+ EAY  LR S
Sbjct: 378 DLQAQDNHPFVPLCIKDPRDYFDSQQANVVKTFDESLADKEKIRRNLGSE-EAYDSLRES 436

Query: 192 ISKIKAKGLKDPLLSSEIAL 211
           IS IK  GL+DPLLS ++A 
Sbjct: 437 ISNIKTMGLRDPLLSHKVAF 456