Miyakogusa Predicted Gene

Lj0g3v0044669.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0044669.1 Non Characterized Hit- tr|D8TGJ6|D8TGJ6_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,43.33,0.000000000000001,coiled-coil,NULL; seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.2073.1
         (275 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090110.1 | TFIIH basal transcription factor complex subun...   348   3e-96
Medtr6g071555.1 | TFIIH basal transcription factor complex subun...   320   7e-88

>Medtr1g090110.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr1:40358314-40346004 | 20130731
          Length = 586

 Score =  348 bits (894), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 189/295 (64%), Positives = 210/295 (71%), Gaps = 35/295 (11%)

Query: 1   MEADQGDDYTHLPDHRIFRDGSKEIPEAQHPLCRRTLLQDLNRQGAVVLEGRTLDI-ME- 58
           MEADQGDDYTHLPDH IFRDGSKE  EAQ+ L RRTLLQDLNRQ  VVLEG+TLDI ME 
Sbjct: 284 MEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEH 343

Query: 59  --------TEYIHESDGVREEARRNRISTMTQIEDLQAQDDHPFAPLCIKDPRDYFGSQQ 110
                       HESDGV EE RRNRIS M QIEDLQAQDDHPFAPLCIKDPRDYF SQQ
Sbjct: 344 PRTAVEALARRKHESDGVVEE-RRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQ 402

Query: 111 ANG----------------SLGSDEEAYGYLRASISKIKAKGLKDPLLSSEIALNGL--M 152
           AN                 +LGS EEAYG LR SIS IK  GL+DPLLS E+A   L  +
Sbjct: 403 ANAVKTLDDSLSGKEKIRCNLGS-EEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSEL 461

Query: 153 TKNVXXXXXXXXXXXXXXXQEISDHDSLPSTMRDELLDHLRCSQELLRHFWSSYPITTRH 212
           TKN+                +I     LP+T +++LLDH  CSQELLRHFWSSYP+T + 
Sbjct: 462 TKNISSTKSNLGKSSQESVLDI-----LPNTTKEKLLDHWVCSQELLRHFWSSYPVTKQS 516

Query: 213 LINKTRRLKEAISQLYSKLEEIKVSAHFDLRHQVSVFVHPMQQSLEAALLHYDAD 267
           L++K RRLK+AISQ+YSKLEEIKVSA  DLRHQVS+ VHPMQQ+L+AALLHYDAD
Sbjct: 517 LVDKARRLKDAISQIYSKLEEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDAD 571


>Medtr6g071555.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr6:26537866-26536124 | 20130731
          Length = 580

 Score =  320 bits (821), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 176/293 (60%), Positives = 200/293 (68%), Gaps = 38/293 (12%)

Query: 1   MEADQGDDYTHLPDHRIFRDGSKEIPEAQHPLCRRTLLQDLNRQGAVVLEGRTLDI---- 56
           MEADQGDDYTHLPDH IFRDG KE  EAQ+ L RRTLLQDLNRQ  VVLEG+TLDI    
Sbjct: 285 MEADQGDDYTHLPDHGIFRDGCKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEH 344

Query: 57  --METEYI----HESDGVREEARRNRISTMTQIEDLQAQDDHPFAPLCIKDPRDYFGSQQ 110
              E E +    HESDGV EE RRNRIS   QIEDLQAQD+HPF PLCIKDPRDYF SQQ
Sbjct: 345 PRTEVEVLARRKHESDGVVEE-RRNRISKTAQIEDLQAQDNHPFVPLCIKDPRDYFDSQQ 403

Query: 111 AN----------------GSLGSDEEAYGYLRASISKIKAKGLKDPLLSSEIALNGLMTK 154
           AN                 +LGS EEAY  LR SIS IK  GL+DPLLS ++A   L   
Sbjct: 404 ANVVKTFDESLADKEKIRRNLGS-EEAYDSLRESISNIKTMGLRDPLLSHKVAFKVLTVL 462

Query: 155 NVXXXXXXXXXXXXXXXQEISDHDSLPSTMRDELLDHLRCSQELLRHFWSSYPITTRHLI 214
           N                      D LP++ +++LLDH  CSQELLRHFWSSYP++T+ L+
Sbjct: 463 NKSISSTTKECVL----------DILPNSTKEKLLDHWVCSQELLRHFWSSYPVSTQSLV 512

Query: 215 NKTRRLKEAISQLYSKLEEIKVSAHFDLRHQVSVFVHPMQQSLEAALLHYDAD 267
           +K  RLK+AISQ+YSKLEEIKVSA  +LR QVS+ V PMQQ+L+AALLHYDAD
Sbjct: 513 SKATRLKDAISQIYSKLEEIKVSAQSNLRDQVSLVVDPMQQALDAALLHYDAD 565