Miyakogusa Predicted Gene
- Lj0g3v0043809.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0043809.1 CUFF.2040.1
(1402 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g034405.1 | DNA repair UVH3-like protein | HC | chr7:12893... 1550 0.0
Medtr6g055360.1 | flap endonuclease GEN-like protein | HC | chr6... 108 3e-23
Medtr7g076290.1 | flap endonuclease GEN-like protein | HC | chr7... 99 3e-20
Medtr1g085130.1 | flap endonuclease 1-A | HC | chr1:38000945-380... 74 1e-12
Medtr1g085130.2 | flap endonuclease 1-A | HC | chr1:38001007-380... 74 1e-12
Medtr1g085130.3 | flap endonuclease 1-A | HC | chr1:38000945-380... 74 1e-12
Medtr1g085130.4 | flap endonuclease 1-A | HC | chr1:38000945-380... 73 2e-12
Medtr8g087940.2 | 5'-3' exonuclease family protein | HC | chr8:3... 71 9e-12
Medtr8g087940.1 | 5'-3' exonuclease family protein | HC | chr8:3... 70 1e-11
>Medtr7g034405.1 | DNA repair UVH3-like protein | HC |
chr7:12893024-12880077 | 20130731
Length = 1673
Score = 1550 bits (4012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1377 (62%), Positives = 972/1377 (70%), Gaps = 70/1377 (5%)
Query: 33 MILPAMYGEVDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAY 92
MILP+M+ EVDPAVLASLPPSMQLDLLVQMRERL+AENRQKYQKVKKDPAKFSELQI+AY
Sbjct: 358 MILPSMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPAKFSELQIEAY 417
Query: 93 LKTVAFRREIDVVQKAATXXXXXXXQTSRIASEANREYIFSSSFTGDKQELTSTRIEKNN 152
LKTVAFRREI+ VQKA+ QTSRIASEANREYIFSSSF+GDKQ L STR+E+N
Sbjct: 418 LKTVAFRREINEVQKASVGGGVGGVQTSRIASEANREYIFSSSFSGDKQGLASTRLERNV 477
Query: 153 EDKQQKAQGTSSSRNFANIITVGNNSGTSVGLVSAEPGEPVDENIETYLDERGRFRVSRV 212
ED QQ +GT S NF N IT GN S TS GLV + EPVDE+IETYLDERGRFRVSR
Sbjct: 478 EDTQQMQRGTHPSHNFVNNITAGNVSKTSAGLVGNDSSEPVDESIETYLDERGRFRVSRS 537
Query: 213 RAMGMRMTRDIQRNLDLMKEIEQERTYVNNAANIETVLNIENSGPSEISGIHNIGKSREV 272
RAMGMRMTRDIQRNLDLMKEIE +RT VN NIETV N +NS P E SG K++EV
Sbjct: 538 RAMGMRMTRDIQRNLDLMKEIEHDRTDVNKVDNIETVPNTDNS-PLECSGNQLSCKAQEV 596
Query: 273 NVDFVGENVQNEQLKLDRDTSLEVSFEYDCKNKFVNGEDDIFASLVGGNPVALFCADATT 332
N++ VGENV+NE+L L +DTS+E+SFEYDCKN+F +G DDIFASLVGG + AD T
Sbjct: 597 NLELVGENVENEKLMLGKDTSIEISFEYDCKNEFASGGDDIFASLVGGISLEHSHADDTV 656
Query: 333 AEVQCSGSDSDCDWEEGVVGGKNTTFPSHNKVELKXXXXXXXXXXXXXXXX---XXGYCG 389
VQ SGSDSDCDWEEG V KNT FP +N+V LK G C
Sbjct: 657 VNVQPSGSDSDCDWEEGTVQDKNTIFPGYNEVGLKSSGEYDDNNNDNNDSEVEWEEGDCN 716
Query: 390 GAKSTSLCPAESGKLASRGCLQEESDLQEAIRRSLENTWDGNLNCKSTVDEHSNAYERKL 449
G ST LCPAESGK+AS+G L+EESDLQEAIRRS+E+T DG L S+ DEHS+A E KL
Sbjct: 717 GTTST-LCPAESGKVASKGHLEEESDLQEAIRRSIESTQDGKLKYVSSSDEHSSACENKL 775
Query: 450 DSELEHDDNFRC-SGSTDLNDNSMGGSPLPMKGSIESIEFQQTVDADKKHDCVTRSNPQT 508
D LEH DN S DLND SM S LP +G E E +TV DK+ + VTR+N +T
Sbjct: 776 DPNLEHGDNGGFGSNPMDLND-SMVDSNLPREGHNEQSELHETV-GDKRENHVTRNNRET 833
Query: 509 FNFHGSQSKSSGTFNLNKTEILIDKPRGLDGHICSEDSISDANVMMKDE--DPVVAEQSL 566
+F+GSQ KS N N T+ LI++P LDGH E+SISD MM DE +P+VAE+SL
Sbjct: 834 SHFNGSQLKSFVAINSNNTDTLINEPSKLDGHDIFENSISDTTAMMMDEVPNPIVAEESL 893
Query: 567 DIHNDDGQVSFYCNKVSKVCPLGVTEEEKRNHINESELLSNSTKSPKPTILLMGSSLNRS 626
D HND G+ S CN +S V GVTEE+K INESE +SNST + IL M SSL +
Sbjct: 894 DNHND-GKTSLCCNSLSNV---GVTEEDKNKLINESEPMSNSTDNTNTAILSMDSSLKGA 949
Query: 627 TEDLDIEPKLPSEDNDGNLSEERNKLVID-AMNTPGVFPAQLPEVQLEDEMEILGQEYIN 685
+D+D+E KLPS +NDGN S ER V +MN PG FP QL EVQL +EM+IL +EY N
Sbjct: 950 KKDIDMELKLPSVNNDGNFSMERTSNVSQGSMNVPGDFPVQLDEVQLNEEMQILDREYRN 1009
Query: 686 LESEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTD 745
LE+EQRKLERNAESV+SELFTECQELLQMFGLPYIIAPMEAEAQCAYLEL+ LVDGVVTD
Sbjct: 1010 LENEQRKLERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTD 1069
Query: 746 DSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKVIHMALLLGSDYTEGVSGI 805
DSDVFLFGARSVYKNIFDDRKYVETYFMED+EKELGL REK+I MALLLGSDYTEGVSGI
Sbjct: 1070 DSDVFLFGARSVYKNIFDDRKYVETYFMEDVEKELGLNREKLIRMALLLGSDYTEGVSGI 1129
Query: 806 GIVNAIEVLNAFPEEDGLLKFRQWVESPDPTILGKLGTKSGSNTRKKGSKVEEKINIESA 865
GIVNAIEVLNAFPEEDGLLKFRQWVESPDPTILG+L KS S KKGSK+EE
Sbjct: 1130 GIVNAIEVLNAFPEEDGLLKFRQWVESPDPTILGRLDAKSVS---KKGSKLEE------- 1179
Query: 866 SDQNISQVQEQKEPPDHMPEIMQTFMDKHRNISKNWHIPPSFPSETVISAYCSPQVDKST 925
KE PD++ E QTFMDKHRN+SKNWHIP SFPSETVISAY SPQVDKST
Sbjct: 1180 -----------KESPDYIQETKQTFMDKHRNVSKNWHIPSSFPSETVISAYISPQVDKST 1228
Query: 926 EPFTWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAK 985
EPF WGKPD LVLRK+CWEKFGW+SQKADELLLPVLK+YNKHETQLRLEAFYSFNERFAK
Sbjct: 1229 EPFAWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKHETQLRLEAFYSFNERFAK 1288
Query: 986 IRSKRIKKAVKGITGKQPSDLIDGSAENLSKSRKSGTGNPVEAEDNKFETSKVTEESLAG 1045
IRSKRIKKAVKGITGK PSDLI S+ ++S K+G G+ V+ ED+K ETSK T++SLA
Sbjct: 1289 IRSKRIKKAVKGITGKPPSDLIADSSGSMSNGTKNGIGSSVDPEDDKLETSKGTDKSLAA 1348
Query: 1046 XXXXXXXXXXXXXNDGNTAAKAQSKKKKIYDDPLSAPGTSEVSNLQSCVQTKEGRCHKEL 1105
NDGNT AK +KKKKI D SAP SE+ NLQ C+QT+ ++L
Sbjct: 1349 RKKSKAKESTKRKNDGNTVAKQHTKKKKINDVSSSAPAASEIENLQPCMQTEGQYDGEDL 1408
Query: 1106 VPNXXXXXXXXXXXXXXXXXXXXXXXXLIFXXXXXXXXXXXXDIDDHGPRAQVDVSQVPE 1165
V F DID+H PRAQVD+S VP+
Sbjct: 1409 VQIKSSRGRGRGKGVGVTRGREKKSRH--FQPSETETSSSSLDIDNHEPRAQVDLSSVPD 1466
Query: 1166 VVRRSTRSRKPVNY-LKDLEVEDGVDSFDQSNQTCSFDEPAEKLFHNHGECGDGATDFSN 1224
V RRS RSRKPVNY +DLEVED VDSFDQSNQ C E L C DG+ S
Sbjct: 1467 VKRRSMRSRKPVNYSFEDLEVEDAVDSFDQSNQKCLRRE----LVEEKSMCIDGS---SI 1519
Query: 1225 GKESSLVDLPLKENTPRDYLESEGRFCMDAGESSPPGTSNRDSSFDPGPSDDYLKVGGGF 1284
GKES ++++PLK+N P DYLE E DAG ++P PSDDYL++GGGF
Sbjct: 1520 GKESGMLEIPLKDNLPADYLEPE----TDAGAATPR----------THPSDDYLEMGGGF 1565
Query: 1285 CLDDSEXXXXXXXXXXXXXXXXXXXXEFRHSSEFVDETDSDKNSSDKLFSGAEKAENEVE 1344
C+DDSE SE + ETD DK+SSD LF GAEKA +E +
Sbjct: 1566 CVDDSEMDNNHDAIDDMNTSTANSPP----FSELLGETDRDKSSSDILFLGAEKATSETQ 1621
Query: 1345 DGTTHRKSNEKPSDHLENASSYNHSNIGALIPENAQHISETSTGAFSAMPFLRKRKK 1401
G + SN+ P+DHL NA +IG LIPENA H SE+S AFSAMPFLRK++K
Sbjct: 1622 HGGECKNSNKLPNDHLLNA------DIGVLIPENAHHNSESSNVAFSAMPFLRKKRK 1672
>Medtr6g055360.1 | flap endonuclease GEN-like protein | HC |
chr6:19794054-19802253 | 20130731
Length = 571
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 12/188 (6%)
Query: 656 AMNTPGVFPA--QLPEVQLEDEMEIL--GQEYINLESEQRK---LERNAESVNSELFTEC 708
A+N VF + +P ++L L G+E E+ +K L RN S S + +E
Sbjct: 66 ALNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQKETNLQKTTSLRRNLGSEFSCMISEA 125
Query: 709 QELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTDDSDVFLFGARSVYKNI-FDDRKY 767
+ L G+ + EAEAQCA L +L DG + DSD+FLFGAR+VY++I D Y
Sbjct: 126 KILGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICLGDGGY 185
Query: 768 VETYFMEDIEKELGLTREKVIHMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFR 827
V Y M DIE++LG R+ +I ++LLLGSDY GV G+G +A +++ + ++ L KF
Sbjct: 186 VVCYEMADIERKLGFGRDSLICLSLLLGSDYYPGVHGLGPDSACQIVKSIGDKFVLKKFA 245
Query: 828 Q----WVE 831
WV+
Sbjct: 246 SEGLGWVK 253
>Medtr7g076290.1 | flap endonuclease GEN-like protein | HC |
chr7:28709723-28704777 | 20130731
Length = 612
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 680 GQEYINLESEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELANLV 739
G E +L + + S S EC EL ++ G+P + A EAEA CA L V
Sbjct: 95 GIESTSLPVAEEGVSAGRNSTFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHV 154
Query: 740 DGVVTDDSDVFLFGARSVYKNIFDDRKY-VETYFMEDIEKELGLTREKVIHMALLLGSDY 798
D +T DSD FLFGA+ + K+ + K E Y M DIE LGL R+ +I ++LL+G+D+
Sbjct: 155 DACITPDSDAFLFGAKCIIKSFSPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDH 214
Query: 799 -TEGVSGIGIVNAIEVLNAFPEEDGL 823
GV GIGI +A+ + AF E+D L
Sbjct: 215 DLSGVQGIGIDSALRFVQAFGEDDIL 240
>Medtr1g085130.1 | flap endonuclease 1-A | HC |
chr1:38000945-38008617 | 20130731
Length = 384
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 707 ECQELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTDDSDVFLFGARSVYKNIFD--- 763
+C+ LL++ G+P + AP EAEAQCA L A V V ++D D FGA +++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 764 DRKYVETYFMEDIEKELGLTREKVIHMALLLGSDYTEGVSGIGIVNAIEVL 814
+ V + + I +EL LT ++ I + +L G DY + + GIG + A++++
Sbjct: 201 KKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLI 251
>Medtr1g085130.2 | flap endonuclease 1-A | HC |
chr1:38001007-38008524 | 20130731
Length = 369
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 707 ECQELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTDDSDVFLFGARSVYKNIFD--- 763
+C+ LL++ G+P + AP EAEAQCA L A V V ++D D FGA +++ D
Sbjct: 126 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSS 185
Query: 764 DRKYVETYFMEDIEKELGLTREKVIHMALLLGSDYTEGVSGIGIVNAIEVL 814
+ V + + I +EL LT ++ I + +L G DY + + GIG + A++++
Sbjct: 186 KKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLI 236
>Medtr1g085130.3 | flap endonuclease 1-A | HC |
chr1:38000945-38008609 | 20130731
Length = 416
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 707 ECQELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTDDSDVFLFGARSVYKNIFD--- 763
+C+ LL++ G+P + AP EAEAQCA L A V V ++D D FGA +++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 764 DRKYVETYFMEDIEKELGLTREKVIHMALLLGSDYTEGVSGIGIVNAIEVL 814
+ V + + I +EL LT ++ I + +L G DY + + GIG + A++++
Sbjct: 201 KKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLI 251
>Medtr1g085130.4 | flap endonuclease 1-A | HC |
chr1:38000945-38008113 | 20130731
Length = 383
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 707 ECQELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTDDSDVFLFGARSVYKNIFD--- 763
+C+ LL++ G+P + AP EAEAQCA L A V V ++D D FGA +++ D
Sbjct: 141 DCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSS 200
Query: 764 DRKYVETYFMEDIEKELGLTREKVIHMALLLGSDYTEGVSGIGIVNAIEVL 814
+ V + + I +EL LT ++ I + +L G DY + + GIG + A++++
Sbjct: 201 KKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLI 251
>Medtr8g087940.2 | 5'-3' exonuclease family protein | HC |
chr8:36390120-36384591 | 20130731
Length = 721
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 695 RNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTDDSDVFLFGA 754
+ A ++ ++ E ++L+ + Y++AP EA+AQ +L ++ VD V+T+DSD+ FG
Sbjct: 120 QKAVDISPQIARELIQVLKQENVQYVVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGC 179
Query: 755 RSVYKNIFDDRKYVE----TYFMEDIEKEL---GLTREKVIHMALLLGSDYTEGVSGIGI 807
+ IF K+ + Y M KEL G ++ ++ M +L G DY + + G+G+
Sbjct: 180 PRI---IFKMDKFGQGVQFQYSMLQKNKELNFEGFNKQMLLEMCILSGCDYLQSLPGMGL 236
Query: 808 VNAIEVLNAFPEEDGLLKFRQW 829
A + F D +LK ++
Sbjct: 237 KKAHASIKRFKSYDKVLKHLKY 258
>Medtr8g087940.1 | 5'-3' exonuclease family protein | HC |
chr8:36390120-36384780 | 20130731
Length = 735
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 695 RNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELANLVDGVVTDDSDVFLFGA 754
+ A ++ ++ E ++L+ + Y++AP EA+AQ +L ++ VD V+T+DSD+ FG
Sbjct: 120 QKAVDISPQIARELIQVLKQENVQYVVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGC 179
Query: 755 RSVYKNIFDDRKYVE----TYFMEDIEKEL---GLTREKVIHMALLLGSDYTEGVSGIGI 807
+ IF K+ + Y M KEL G ++ ++ M +L G DY + + G+G+
Sbjct: 180 PRI---IFKMDKFGQGVQFQYSMLQKNKELNFEGFNKQMLLEMCILSGCDYLQSLPGMGL 236
Query: 808 VNAIEVLNAFPEEDGLLKFRQW 829
A + F D +LK ++
Sbjct: 237 KKAHASIKRFKSYDKVLKHLKY 258