Miyakogusa Predicted Gene

Lj0g3v0042719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0042719.1 Non Characterized Hit- tr|C6T2R2|C6T2R2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,89.08,0,ZF_RING_2,Zinc finger, RING-type; seg,NULL; no
description,Zinc finger, RING/FYVE/PHD-type;
zf-rbx1,,NODE_31641_length_677_cov_60.376663.path1.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g088570.1 | anaphase-promoting complex subunit 11 RING-H2 ...   188   1e-48
Medtr4g046877.1 | anaphase-promoting complex subunit 11 RING-H2 ...   187   2e-48
Medtr4g007410.1 | anaphase-promoting complex subunit 11 RING-H2 ...    67   4e-12
Medtr7g005900.1 | anaphase-promoting complex subunit 11 RING-H2 ...    57   4e-09
Medtr7g005900.3 | anaphase-promoting complex subunit 11 RING-H2 ...    49   1e-06
Medtr7g005900.2 | anaphase-promoting complex subunit 11 RING-H2 ...    49   1e-06

>Medtr2g088570.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr2:37336904-37340640 | 20130731
          Length = 118

 Score =  188 bits (477), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 97/119 (81%), Gaps = 1/119 (0%)

Query: 1   MATLDSDVQMVXXXXXXXXXXXXXXXXXXXXRFEIKKWNAVALWAWDIVVDNCAICRNHI 60
           MATLDSDV MV                    RFEIKKWNAV+LWAWDIVVDNCAICRNHI
Sbjct: 1   MATLDSDVPMVPAGETSCCAHGGPSSKKPK-RFEIKKWNAVSLWAWDIVVDNCAICRNHI 59

Query: 61  MDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           MD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 60  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118


>Medtr4g046877.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr4:16748749-16744181 | 20130731
          Length = 117

 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 97/119 (81%), Gaps = 2/119 (1%)

Query: 1   MATLDSDVQMVXXXXXXXXXXXXXXXXXXXXRFEIKKWNAVALWAWDIVVDNCAICRNHI 60
           M+TLDSDV MV                    RFEIKKWNAVALWAWDIVVDNCAICRNHI
Sbjct: 1   MSTLDSDVTMVPAGEPSSSAAGPSSKKPK--RFEIKKWNAVALWAWDIVVDNCAICRNHI 58

Query: 61  MDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
           MD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 59  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117


>Medtr4g007410.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr4:1024420-1022587 | 20130731
          Length = 88

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 38  WNAVALWAWDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISR 97
           W+AVA W WD   + C ICR      C +C+        D+C + WG CNHAFH HCI +
Sbjct: 12  WHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILK 66

Query: 98  WLKTRQV---CPLDNSEWEFQ 115
           W+ ++     CP+   EW+F+
Sbjct: 67  WVNSQTSQAHCPMCRREWQFK 87


>Medtr7g005900.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr7:384218-382340 | 20130731
          Length = 77

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 45  AWDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQV 104
            WD   + C ICR      C +C+        D+C + WG CNHAFH HCI +W+ ++  
Sbjct: 8   TWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHLHCILKWVNSQTS 62

Query: 105 ---CPLDNSEWEFQ 115
              CP+   EW+F+
Sbjct: 63  QAHCPMCRREWQFK 76


>Medtr7g005900.3 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr7:383996-382340 | 20130731
          Length = 57

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 75  TADECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQ 115
             D+C + WG CNHAFH HCI +W+ ++     CP+   EW+F+
Sbjct: 13  PGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK 56


>Medtr7g005900.2 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr7:383996-382340 | 20130731
          Length = 57

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 75  TADECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQ 115
             D+C + WG CNHAFH HCI +W+ ++     CP+   EW+F+
Sbjct: 13  PGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK 56