Miyakogusa Predicted Gene
- Lj0g3v0041649.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0041649.1 Non Characterized Hit- tr|A2YTG5|A2YTG5_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,43.81,0.00000000000001,WD_REPEATS_1,WD40 repeat, conserved site;
WD40 repeats,WD40 repeat; WD40 repeat-like,WD40-repeat-con,CUFF.1947.1
(469 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g116900.1 | transducin/WD-like repeat-protein | HC | chr4:... 529 e-150
Medtr4g116910.1 | transducin/WD-like repeat-protein | HC | chr4:... 402 e-112
Medtr5g070310.1 | damaged DNA-binding protein | HC | chr5:297602... 79 1e-14
Medtr5g067190.1 | drought sensitive protein, putative | LC | chr... 54 4e-07
Medtr1g072740.1 | Pre-mRNA splicing factor | HC | chr1:32289799-... 51 3e-06
Medtr4g102520.1 | Pre-mRNA splicing factor | HC | chr4:42494871-... 50 4e-06
Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protei... 50 4e-06
Medtr7g086360.1 | U5 small nuclear ribonucleoprotein 40 kDa-like... 50 7e-06
>Medtr4g116900.1 | transducin/WD-like repeat-protein | HC |
chr4:48412704-48410145 | 20130731
Length = 463
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 264/467 (56%), Positives = 323/467 (69%), Gaps = 21/467 (4%)
Query: 5 QKLTEYERKRLDNIRRNEEMVXXXXXXXXXXXXXXRPR-VAXXXXXXXXXXXXXXTPVVL 63
QKLTEYERKRL+NIRRN EM+ P+ V TP+V+
Sbjct: 4 QKLTEYERKRLENIRRNNEMMAALKVHTKATELSILPKAVTKSYSVKSEKKPKTETPIVI 63
Query: 64 RRSARARGAPPDYTGLVDPVLSNALAYKFPTRAKPGVKTLGPLSMSDGHRGSHAQSDRAF 123
RRS R RG PPD G S+ L P + V+ LGP+ M D ++G SDR+F
Sbjct: 64 RRSLRTRGIPPDSKG----SDSSTLTRNSPQKINDFVQNLGPIPMKDAYKGDD-DSDRSF 118
Query: 124 LDSLLGMASEE--EKKLGGSRKSGKILNGNGAKRGKKTXXXXXXXXXXXXDPENIARVVP 181
++SL+GM+++E E++L NG+ + KK DPENIARVVP
Sbjct: 119 IESLVGMSNKEFSEEEL------------NGSAKKKKKIECSLELESLNLDPENIARVVP 166
Query: 182 ERIVQVQFFPSSSNKMIVVGDKGGHIGFWGVGKRLTYLYRPHQAPISGISVQQRCLSKIY 241
RI Q++F PS+ KM+ G+K G IGFW VG+ +LY PHQAPISGI Q CLSKIY
Sbjct: 167 GRITQMRFCPSNDVKMVAAGNKFGDIGFWNVGESEIFLYHPHQAPISGILFQPHCLSKIY 226
Query: 242 TSCYDGVVRLMDAEKEIFDLVFTSDDEGIFSLSQPKNDSNCIYFGDGSGGFTVWDCRTGK 301
TSCYDG++RLMDAEKEIFD+V+ ++ I++LSQPKN+ NC+YF +GSGG +VWD R GK
Sbjct: 227 TSCYDGLIRLMDAEKEIFDMVYNGEN-SIYALSQPKNEVNCLYFAEGSGGLSVWDNRIGK 285
Query: 302 CSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDKPTALKTLTHQKYVQ 361
CSS W LHE++INTIDF+ + HIVAT S+D TACTWDLR GG K T+L+T TH++ VQ
Sbjct: 286 CSSQWDLHESRINTIDFSPQTTHIVATSSSDGTACTWDLRSIGGPKHTSLRTFTHKRSVQ 345
Query: 362 SAYFSPSGCSLATTCADNTISIYSGVNLEDATSIYHDNFTGRWLSPFRAIWGWDDSYLFI 421
SAYFSPSGCSLATT DNTI IY GVNLED S+YHDN TGRW+S FRAIWGWD+SY+FI
Sbjct: 346 SAYFSPSGCSLATTSLDNTIGIYGGVNLEDKISVYHDNQTGRWISTFRAIWGWDNSYIFI 405
Query: 422 GNMKRGVDVVSATERAIVTTLQSPHMSAIPCRFNAHFTEVGMLAGAT 468
GNMKRGVDVVS +RA + TLQSPH+SAIPCRF+A+ EVGMLAGAT
Sbjct: 406 GNMKRGVDVVSTVQRATIKTLQSPHISAIPCRFDANSCEVGMLAGAT 452
>Medtr4g116910.1 | transducin/WD-like repeat-protein | HC |
chr4:48420430-48416741 | 20130731
Length = 441
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/480 (45%), Positives = 291/480 (60%), Gaps = 61/480 (12%)
Query: 1 MEESQKLTEYERKRLDNIRRNEEMVXXXXXXXXXXXXXXRPRVAXXXXXXXXXXXXXXTP 60
M QK++EYERKRL+NIRRN+EM+ +++ TP
Sbjct: 1 MATPQKVSEYERKRLENIRRNKEMMSALQIHSKAS------QLSKAVTKSEKKKLKTETP 54
Query: 61 VVLRRSA-RARGAPPDYTGLVDPVLSNALAYKFPTRAKPGVKTLGPLSMSDGHRGSHAQS 119
+ RS+ R RG P KP +T+ PL M D ++G+H S
Sbjct: 55 IAAARSSLRIRGIPA-----------------LTLETKPLNQTMDPLPMKDTYKGTH--S 95
Query: 120 DRAFLDSLLGMASEEEKKLGGSRKSGKILNGNGAKRGKKTXXXXXXXXXXXXDPENIARV 179
DR+F++SL + ++++ N + +K D +NIARV
Sbjct: 96 DRSFVESLADSSMSNKEQV------------NDTSKNRKKIECSLELESLSLDRKNIARV 143
Query: 180 VPER-IVQVQFFPSSSNKMIVVGDKGGHIGFWGVGKRLTYLYRPHQAPISGISVQQRCLS 238
VP+ I ++F PS+ KM+V G++ G IGFW VG+ ++Y PHQAPISGIS+ CLS
Sbjct: 144 VPDGGITHLRFLPSNDFKMVVAGNRVGDIGFWNVGESEVFVYHPHQAPISGISIHPHCLS 203
Query: 239 KIYTSCYDGVVRLMDAEKEIFDLVFTSD--------DEGIFSLSQPKNDSNCIYFGDGSG 290
KIYTSC DG VR+MDAEKE+FD+V+ S D+GI++LSQPKN++NC+Y +GSG
Sbjct: 204 KIYTSCNDGFVRMMDAEKEVFDMVYHSSNDESKKKKDKGIYALSQPKNEANCLYLAEGSG 263
Query: 291 GFTVWDCRTGKCSSS--WALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDKP 348
TVWD R GKCSSS LH+ +INTIDFN ENPHI T S+D TAC
Sbjct: 264 YLTVWDNRIGKCSSSSRLDLHQLRINTIDFNPENPHIGVTSSSDGTACNL---------- 313
Query: 349 TALKTLTHQKYVQSAYFSPSGCSLATTCADNTISIYSGVNLEDATSIYHDNFTGRWLSPF 408
TAL+ T++ +QSAYFSPSG S+A T + NTI IYSGVNLEDA +YH++ + S F
Sbjct: 314 TALRKFTYEGGMQSAYFSPSGRSIAITSSKNTIGIYSGVNLEDAAFVYHESI--KVFSTF 371
Query: 409 RAIWGWDDSYLFIGNMKRGVDVVSATERAIVTTLQSPHMSAIPCRFNAHFTEVGMLAGAT 468
RAIWGWDDSY+F+G+ KRGVDVVSA ++A V TL+SP +SAIP +F+AH EVGMLAGA+
Sbjct: 372 RAIWGWDDSYIFMGSEKRGVDVVSAVQKATVMTLESPLISAIPLKFDAHSYEVGMLAGAS 431
>Medtr5g070310.1 | damaged DNA-binding protein | HC |
chr5:29760236-29765378 | 20130731
Length = 558
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 34/305 (11%)
Query: 176 IARVVPERIVQVQFFPSSSNKMIVVGDKGGHIGFWG---VGKRLTYLYRPHQAPISGISV 232
+ R RI ++F P+ +N +++ GDK G +G W V +++ Y + H ++ +
Sbjct: 166 VIRYHSRRITSLEFHPTKNN-ILLSGDKKGQLGVWDFEKVHEKVVYDDK-HSCILNNMKF 223
Query: 233 QQRCLSKIYTSCYDGVVRLMDAEKEIFDLVFTSDDEGIFSLSQPKN----DSNC----IY 284
+Y++ DG + D E + + + +G + K D NC +
Sbjct: 224 NPTNDCMVYSASSDGTISYTDLETGMSSSLMNLNPDGWHGPNTWKMLYGMDINCEKGLVL 283
Query: 285 FGDGSGGFTVWDCRTG-KCSSSWALHE--NKINTIDFNCENPHIVATGSTDRTACTWDLR 341
D G + D R+ + + +H+ +K+ I N P I+ T D A WD+R
Sbjct: 284 VADNFGFLHLVDMRSNHRNGDAVLIHKKGSKVTGIHCNPMQPDILLTCGNDHYARIWDMR 343
Query: 342 YTGGDKPTALKTLTHQKYVQSAYFSP-SGCSLATTCADNTISIYSGV--NLEDAT-SIYH 397
++L +L H++ V SAYFSP +G + TT DN + I+ + N+ + I H
Sbjct: 344 RLEAG--SSLCSLEHKRVVNSAYFSPITGNKILTTSQDNRLRIWDSIFGNMASPSREIVH 401
Query: 398 DNFTGRWLSPFRAIWGWDD------------SYLFIGNMKRGVDVVSATERAIVTTLQSP 445
+ R L+PF+A W D S F G +D + + +V + P
Sbjct: 402 SHDFNRHLTPFKAEWDPKDPSESLAVIGRYISENFNGTALHPIDFIDTSTGQLVAEVMDP 461
Query: 446 HMSAI 450
+++ I
Sbjct: 462 NITTI 466
>Medtr5g067190.1 | drought sensitive protein, putative | LC |
chr5:28397023-28396850 | 20130731
Length = 57
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 28/30 (93%)
Query: 239 KIYTSCYDGVVRLMDAEKEIFDLVFTSDDE 268
+IYTSCYDG++RLMDAEKEIFD+V+ +++
Sbjct: 2 QIYTSCYDGLIRLMDAEKEIFDMVYNGENK 31
>Medtr1g072740.1 | Pre-mRNA splicing factor | HC |
chr1:32289799-32294693 | 20130731
Length = 567
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 24/222 (10%)
Query: 180 VPERIVQ-----------VQFFPSSSNKMIVVGDKGGHIGFWGVGK--RLTYLYRPHQAP 226
+P+R+V ++FFP+S + ++ G + W V + Y H
Sbjct: 281 IPKRLVHTWSGHTKGVSAIRFFPNSGHLILSAG-MDTKVKIWDVFNTGKCMRTYMGHSKA 339
Query: 227 ISGISVQQRCLSKIYTSCYDGVVRLMDAEK-EIFDLVFTSDDEGIFSLSQPKNDSNCIYF 285
+ I +K ++ YD ++ D E ++ T + L+ ++ N +
Sbjct: 340 VRDICFTNDG-TKFLSAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDEDKQNVLLA 398
Query: 286 GDGSGGFTVWDCRTGKCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGG 345
G WD TG+ + + H +NTI F +N T S D++ W+
Sbjct: 399 GMSDKKIVQWDMNTGQITQEYDQHLGAVNTITF-VDNNRRFVTSSDDKSLRVWEYGI--- 454
Query: 346 DKPTALKTLT--HQKYVQSAYFSPSGCSLATTCADNTISIYS 385
P +K ++ H + S P+ LA DN I IYS
Sbjct: 455 --PVVIKYISEPHMHSMPSISLHPNANWLAAQSLDNQILIYS 494
>Medtr4g102520.1 | Pre-mRNA splicing factor | HC |
chr4:42494871-42492105 | 20130731
Length = 600
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 24/222 (10%)
Query: 180 VPERIVQ-----------VQFFPSSSNKMIVVGDKGGHIGFWGVGK--RLTYLYRPHQAP 226
+P+R+V ++FFP+S + +I+ + W V + Y H
Sbjct: 282 IPKRLVHTWSGHTKGVSAIRFFPNSGH-LILSAGMDTKVKIWDVFNTGKCMRTYMGHSKA 340
Query: 227 ISGISVQQRCLSKIYTSCYDGVVRLMDAEK-EIFDLVFTSDDEGIFSLSQPKNDSNCIYF 285
+ I +K ++ YD ++ D E ++ T + L+ ++ N +
Sbjct: 341 VRDICFTNDG-TKFLSAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDEDKQNVLLA 399
Query: 286 GDGSGGFTVWDCRTGKCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGG 345
G WD TG+ + + H +NTI F +N T S D++ W+
Sbjct: 400 GMSDKKIVQWDMNTGQITQEYDQHLGAVNTITF-VDNNRRFVTSSDDKSLRVWEYGI--- 455
Query: 346 DKPTALKTLT--HQKYVQSAYFSPSGCSLATTCADNTISIYS 385
P +K ++ H + S P+ LA DN I IYS
Sbjct: 456 --PVVIKYISEPHMHSMPSISLHPNANWLAAQSLDNQILIYS 495
>Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protein |
HC | chr6:91770-77124 | 20130731
Length = 760
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 14/195 (7%)
Query: 194 SNKMIVVGDKGGHIGFWGVGKRLTYL-YRPHQAPISGISVQQRCLSKIYTSCYDGVVRLM 252
S++++V G + + W +GK L H + I ++ + + G ++L
Sbjct: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVNFDSSEV-LVAAGAASGTIKLW 86
Query: 253 DAEKEIFDLVFTSDDEGIFSLS-QPKNDSNCIYFGDGS--GGFTVWDCRTGKCSSSWALH 309
D E+ T S+ P + +F GS +WD R C ++ H
Sbjct: 87 DLEEAKIVRTLTGHRSNCTSVDFHPFGE----FFASGSLDTNLKIWDIRKKGCIHTYKGH 142
Query: 310 ENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDKPTALKTLTHQKYVQSAYFSPSG 369
+N I F + +V+ G D T WDL T G K+ H+ +Q F PS
Sbjct: 143 TRGVNAIRFTPDGRWVVS-GGEDNTVKLWDL--TAGKLLHDFKS--HEGQIQCIDFHPSE 197
Query: 370 CSLATTCADNTISIY 384
LAT AD T+ +
Sbjct: 198 FLLATGSADRTVKFW 212
>Medtr7g086360.1 | U5 small nuclear ribonucleoprotein 40 kDa-like
protein | HC | chr7:33509053-33512350 | 20130731
Length = 345
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 28/199 (14%)
Query: 228 SGISVQQRCLSKIYTSCYDGVVRLMDAEKEIFDLVFTSDDEGIFSLSQPKNDSNCIYFGD 287
SG ++ L ++ C + +V L + + DL +TSD I S S K
Sbjct: 72 SGSHDKEIFLWNVHGDCKNFMV-LKGHKNAVLDLHWTSDGTQIISASPDKT--------- 121
Query: 288 GSGGFTVWDCRTGKCSSSWALHENKINTIDFNCENPHIVATGSTDRTACTWDLRYTGGDK 347
+WD TGK H + +N+ P +V +GS D TA WD+R G
Sbjct: 122 ----LRLWDTETGKQIKKMVEHLSYVNSCCPTRRGPPLVVSGSDDGTAKLWDMRQRG--- 174
Query: 348 PTALKTLTHQKYVQSAYFSPSGCSLATTCADNTISIYSGVNLEDATSI--YHDNFTGRWL 405
+++T + + + FS + + T DN + I+ E ++ + D T L
Sbjct: 175 --SIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQL 232
Query: 406 SPFRAIWGWDDSYLFIGNM 424
SP D SYL M
Sbjct: 233 SP-------DGSYLLTNGM 244