Miyakogusa Predicted Gene

Lj0g3v0040799.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0040799.1 Non Characterized Hit- tr|B7PMF6|B7PMF6_IXOSC
Putative uncharacterized protein OS=Ixodes scapularis
,32.14,8e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; TIM21,Mitochondrial inner membrane transl,CUFF.1876.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g077430.1 | import inner membrane translocase subunit TIM2...   321   4e-88

>Medtr1g077430.1 | import inner membrane translocase subunit TIM21,
           putative | HC | chr1:34546589-34542152 | 20130731
          Length = 248

 Score =  321 bits (823), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 164/248 (66%), Positives = 180/248 (72%), Gaps = 7/248 (2%)

Query: 1   MFRIRRILCHRXXXXXXXXXXXSVSETRXXXXXXX-------XXXXGIRENHRSPSFARF 53
           MFRIRRIL +R           S S+ R                  GI EN+ S S  RF
Sbjct: 1   MFRIRRILSYRALASCTRNALSSSSQPRSLPRSNAPILPPPFFLDVGIAENYGSTSLTRF 60

Query: 54  LSSRAKREPGQSTEKTKKEISKVEDTFDDAPTYHIPEKPVTFVEGASYSXXXXXXXXXXX 113
           +SS A  E G++TEKTKKE+  VED FDDAPTY+IPEKPVTFVEGASYS           
Sbjct: 61  MSSNASSEQGKNTEKTKKELKNVEDPFDDAPTYNIPEKPVTFVEGASYSLVILAGLGVAA 120

Query: 114 XXXXXXFKELIFQPKEYKIYNKALKRIQDDPQVRVRIGNPITGYGQESRNRAARQRIPHR 173
                 FKELIFQPKEYKIYNKALKRIQDD QVR RIG+PITGYGQESRNRAARQRIP+R
Sbjct: 121 AAGYSVFKELIFQPKEYKIYNKALKRIQDDGQVRGRIGSPITGYGQESRNRAARQRIPNR 180

Query: 174 VWTDEDNVEHVEVNFYIRGPHGHGKIFAEMFKPADNEWQFTYLIVEIKAPSPAQLILESY 233
           VWTDE+ VEHVEVNF+IRGPHGHGK+FAEMFK AD EW +TYLIVEI+APSPAQLILESY
Sbjct: 181 VWTDEEGVEHVEVNFFIRGPHGHGKVFAEMFKGADGEWSYTYLIVEIRAPSPAQLILESY 240

Query: 234 IPAYNANK 241
           IP+YN NK
Sbjct: 241 IPSYNPNK 248