Miyakogusa Predicted Gene

Lj0g3v0038999.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0038999.1 Non Characterized Hit- tr|I3SV60|I3SV60_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.35,0,seg,NULL;
no description,NULL; Rhomboid-like,NULL; DUF1751,Protein of unknown
function DUF1751, inte,CUFF.1778.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g095490.1 | transmembrane protein, putative | HC | chr1:42...   432   e-121

>Medtr1g095490.1 | transmembrane protein, putative | HC |
           chr1:42949667-42953031 | 20130731
          Length = 317

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/274 (75%), Positives = 234/274 (85%), Gaps = 5/274 (1%)

Query: 2   STPTTVSWGTGLFS-----GFTRLCKGLAVVLVGSHLLIHFFPSAVNYLALIPARTIPFA 56
           S P + S GT   S     GFTRLCKGLA+VLV +H +++FFPSA+ YLALIPARTIPFA
Sbjct: 5   SLPVSQSQGTRTLSSVSVSGFTRLCKGLALVLVAAHAVLYFFPSALTYLALIPARTIPFA 64

Query: 57  WNLITAGYIEQTVYGVVVSTFSLLFFGKLLEPIWGSREFCKFIFVVNFLTSVSVFITAIA 116
           WNLITAGY+EQTV+GVV+S   LL  GKLLEP+WG REF KFIF+VN LTS+ +FITAIA
Sbjct: 65  WNLITAGYVEQTVHGVVISIVCLLLIGKLLEPVWGPREFIKFIFIVNILTSLCIFITAIA 124

Query: 117 LYYITRQENYLYMPLSGFHGVISGFLVGLKQIIPDQELPFIKIKTKWLPSITLLLSIAVC 176
           LYYITRQE YLY PLSGFHGVISGFLV +KQIIPDQELPF+ IK KWLPSI LL SIA+ 
Sbjct: 125 LYYITRQEIYLYTPLSGFHGVISGFLVSIKQIIPDQELPFVNIKMKWLPSIALLCSIALS 184

Query: 177 FWTLEATSYLPTIVSGTYISWIYLRYWQRKPETKHRGDPSEDFAFSSFFPELLRPFIDPI 236
           FW +EAT+YLPT++ GTY+SWIYLRYWQ+KPETK +GDPSEDFAFS+FFPE+LRP IDPI
Sbjct: 185 FWIIEATTYLPTVIFGTYMSWIYLRYWQKKPETKLKGDPSEDFAFSTFFPEILRPVIDPI 244

Query: 237 ASIFHRMLCGRSDASNDGQDYSLGSEPLPGSDSV 270
           ASIFHRMLCGRSDASND +DY LGSE LPGSD +
Sbjct: 245 ASIFHRMLCGRSDASNDAEDYDLGSEHLPGSDPI 278