Miyakogusa Predicted Gene

Lj0g3v0038759.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0038759.2 tr|C0JX14|C0JX14_9CHLO Hypothetical chloroplast
RF65 OS=Pyramimonas parkeae GN=ycf65 PE=4
SV=1,57.53,7e-17,RRP3_SPIOL_P82412;,Ribosomal protein PSRP-3/Ycf65;
PSRP-3_Ycf65,Ribosomal protein PSRP-3/Ycf65,CUFF.1745.2
         (73 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g090520.1 | plastid-specific 30S ribosomal protein, putati...   145   1e-35

>Medtr6g090520.1 | plastid-specific 30S ribosomal protein, putative
           | HC | chr6:34063921-34062230 | 20130731
          Length = 161

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/73 (94%), Positives = 70/73 (95%)

Query: 1   MEKNIGIALDQAVPGHDTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATD 60
           MEKNIGI LDQ +PGH TIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATD
Sbjct: 88  MEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATD 147

Query: 61  IINLWQQSGGNLS 73
           IINLWQQSGGNLS
Sbjct: 148 IINLWQQSGGNLS 160