Miyakogusa Predicted Gene

Lj0g3v0038519.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0038519.1 tr|F6HGF2|F6HGF2_VITVI DNA-directed RNA
polymerase OS=Vitis vinifera GN=VIT_01s0010g00690 PE=3
SV=1,89.81,0,DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL,DNA-directed
RNA polymerase, phage-type; no
description,N,NODE_37037_length_3713_cov_14.511716.path3.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g065900.1 | DNA-directed RNA polymerase-like protein | HC ...   209   6e-55
Medtr7g017440.1 | leguminosin group485 secreted peptide | HC | c...   203   3e-53

>Medtr8g065900.1 | DNA-directed RNA polymerase-like protein | HC |
           chr8:27401434-27394114 | 20130731
          Length = 727

 Score =  209 bits (531), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 93/108 (86%), Positives = 101/108 (93%)

Query: 1   MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
           M KRQRTAF PNFVHSLDGSHMMMTAVACK+AG+NFAGVHDSYWTHACDV+EMNR+LREK
Sbjct: 620 MVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMNFAGVHDSYWTHACDVEEMNRILREK 679

Query: 61  FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           FVELYE P+LENLLENF+KTFP L FP LPERGD DL+EVL+SPYFFN
Sbjct: 680 FVELYETPILENLLENFEKTFPNLKFPPLPERGDLDLQEVLKSPYFFN 727


>Medtr7g017440.1 | leguminosin group485 secreted peptide | HC |
           chr7:5556630-5564677 | 20130731
          Length = 566

 Score =  203 bits (517), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 91/108 (84%), Positives = 100/108 (92%)

Query: 1   MTKRQRTAFAPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDVDEMNRVLREK 60
           M KRQRTAF PNFVHSLDGSHMMMTA+ACKKAGL+FAGVHDSYWTHACDVD MNR+LREK
Sbjct: 459 MVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLSFAGVHDSYWTHACDVDNMNRILREK 518

Query: 61  FVELYEAPVLENLLENFQKTFPTLNFPALPERGDFDLREVLESPYFFN 108
           FVELYE P+LENLLE+FQ++FP+L FP LPERG+ DL EVLESPYFFN
Sbjct: 519 FVELYETPILENLLESFQESFPSLEFPPLPERGNLDLNEVLESPYFFN 566