Miyakogusa Predicted Gene

Lj0g3v0038509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0038509.1 Non Characterized Hit- tr|I1MMB7|I1MMB7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max GN=G,63.36,0,no
description,NULL; no description,DNA-directed RNA polymerase, helix
hairpin domain;
coiled-coil,N,NODE_37037_length_3713_cov_14.511716.path1.1
         (853 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g065900.1 | DNA-directed RNA polymerase-like protein | HC ...   939   0.0  
Medtr7g017440.1 | leguminosin group485 secreted peptide | HC | c...   657   0.0  
Medtr8g065960.1 | DNA-directed RNA polymerase | HC | chr8:274041...   280   5e-75

>Medtr8g065900.1 | DNA-directed RNA polymerase-like protein | HC |
           chr8:27401434-27394114 | 20130731
          Length = 727

 Score =  939 bits (2427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/573 (79%), Positives = 500/573 (87%), Gaps = 1/573 (0%)

Query: 282 MEKTKKKTKATDNCEGESDLAPVKKGXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNQQAL 341
           MEKTK K   +   + +S  APVK                             QK QQAL
Sbjct: 1   MEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQAL 60

Query: 342 GIVRGRDDWKPWGQEAQVKVGSCLMQLLIDTAYIQPPANQIGDGPPDIRPAFKHTLKNIS 401
           GIV+GRD  KPWGQEAQVKVGS L+QLLI+TAY++PPAN+ GDG PDI PAFKHTLK IS
Sbjct: 61  GIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTIS 120

Query: 402 TDSQNGSKRYGVIECDSLVQQGLEKSARHMVIPYMPMLVPPNNWTGYDKGAYLFLPSYVM 461
            DS NGS+RYGVIECD ++Q+GLEK+AR+MVIPYMPMLVPPNNW GYDKGAYLFLPSYVM
Sbjct: 121 NDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVM 180

Query: 462 RIHGAKQQRDAVKRAPVTQLNPVFEALNTLGSTKWRVNKRVLSVIDQIWAKGGGLADLVD 521
           RIHGAKQQRDA+K AP  QL+ +FEALNTLG+TKWRVNK VL VIDQIWA GG +ADLVD
Sbjct: 181 RIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVD 240

Query: 522 RKDVPLPEELDTEDEAEIRKWKWSVKNVRKENNERHSQRCDIELKLAVARKMKDEDGFYY 581
           R D+PLPEELDTEDE+EIRKWKW VKNV+KENNERHSQRCDIELKLAVARK+K+EDGFYY
Sbjct: 241 RDDLPLPEELDTEDESEIRKWKWKVKNVKKENNERHSQRCDIELKLAVARKLKEEDGFYY 300

Query: 582 PHNLDFRGRAYPMHPYLNHLGSDLCRGILEFGEGRPLGKSGLHWLKIHLANLYA-GGVDK 640
           PHNLDFRGRAYPMHPYLNHLGSDLCRGILEF EGRPLGK GL WLKIHLANLYA GGVDK
Sbjct: 301 PHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKKGLQWLKIHLANLYATGGVDK 360

Query: 641 LCYDGRIAFTENHLDDIFDSANKPLEGKRWWLEAEDPFQCLAACINLAEALRSPTPETTM 700
           L YDGR+AFTE+HLDDIFDSA++PLEGKRWWL+AEDPFQCLAACINL+EALRSP PE T+
Sbjct: 361 LSYDGRVAFTEDHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACINLSEALRSPNPEATL 420

Query: 701 SHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLIGGDQPADVYSGIATRVLEIMRRDAEKD 760
           SHMPVHQDGSCNGLQHYAALGRDKLGA+AVNL+GGD+PADVYSGIA RVL+IM+RDA KD
Sbjct: 421 SHMPVHQDGSCNGLQHYAALGRDKLGASAVNLVGGDKPADVYSGIAARVLQIMKRDALKD 480

Query: 761 PKTNPNALHARNLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDAQLFG 820
           P T+P+ALHAR LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCA+EDD++LF 
Sbjct: 481 PATDPHALHARRLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAVEDDSELFA 540

Query: 821 ASCYAAKTTLTALQEMFEAARSIMGWLGDCAKV 853
           ASCYAAKTTLTAL+EMFEAARSIMGWLGDCAKV
Sbjct: 541 ASCYAAKTTLTALEEMFEAARSIMGWLGDCAKV 573


>Medtr7g017440.1 | leguminosin group485 secreted peptide | HC |
           chr7:5556630-5564677 | 20130731
          Length = 566

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/411 (77%), Positives = 361/411 (87%)

Query: 443 NNWTGYDKGAYLFLPSYVMRIHGAKQQRDAVKRAPVTQLNPVFEALNTLGSTKWRVNKRV 502
            ++  +DKG YLFLPSYVMR HG KQQR+AVK+ P  QL PVFEAL+TLG+TKWRVN +V
Sbjct: 2   THFCSFDKGGYLFLPSYVMRTHGVKQQREAVKKVPRKQLEPVFEALDTLGNTKWRVNNKV 61

Query: 503 LSVIDQIWAKGGGLADLVDRKDVPLPEELDTEDEAEIRKWKWSVKNVRKENNERHSQRCD 562
           LSV+D+IWA GG LA LVDR DV +PEEL+++DEAE +KWKW VK+V+KEN ER+S RCD
Sbjct: 62  LSVVDRIWAGGGRLAGLVDRNDVEIPEELESDDEAEKKKWKWKVKSVKKENRERYSLRCD 121

Query: 563 IELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFGEGRPLGKSG 622
            ELKLAVARKMKDE+ FYYPHNLDFRGRAYPMHP+LNHLGSD+CRGILEF +GRPLGKSG
Sbjct: 122 TELKLAVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDVCRGILEFADGRPLGKSG 181

Query: 623 LHWLKIHLANLYAGGVDKLCYDGRIAFTENHLDDIFDSANKPLEGKRWWLEAEDPFQCLA 682
           LHWLKIHLANLY GGVDKL  +GRI F ENHLD+IFDSA +P+EG+RWWL AEDPFQ LA
Sbjct: 182 LHWLKIHLANLYGGGVDKLSNEGRITFVENHLDEIFDSAEQPMEGRRWWLNAEDPFQFLA 241

Query: 683 ACINLAEALRSPTPETTMSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLIGGDQPADVY 742
           AC+ L EAL+  TPE+ +SH+PVHQDGSCNGLQHYAALGRDKLGAAAVNL+ G++PADVY
Sbjct: 242 ACMTLTEALKISTPESFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVY 301

Query: 743 SGIATRVLEIMRRDAEKDPKTNPNALHARNLINQVDRKLVKQTVMTSVYGVTYIGARDQI 802
           SGIA RVL IM+ DA+KDP+T   A HA+ L+NQVDRKLVKQTVMTSVYGVTYIGAR+QI
Sbjct: 302 SGIAARVLAIMKIDAQKDPETFSEARHAKILVNQVDRKLVKQTVMTSVYGVTYIGAREQI 361

Query: 803 KRRLKERCAIEDDAQLFGASCYAAKTTLTALQEMFEAARSIMGWLGDCAKV 853
           KRRLKER AI DD++LFGA+CYAAK TLTALQEMFE ARSIM WLGDCAKV
Sbjct: 362 KRRLKERDAIADDSELFGAACYAAKVTLTALQEMFEGARSIMNWLGDCAKV 412


>Medtr8g065960.1 | DNA-directed RNA polymerase | HC |
           chr8:27404131-27403218 | 20130731
          Length = 259

 Score =  280 bits (715), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 156/277 (56%), Positives = 175/277 (63%), Gaps = 19/277 (6%)

Query: 1   MWTNIVKRTSSRXXXXXXXXXXXXXXXXXXXXYPNFPEKIVPLEVNSRHPLLGFNQVGAF 60
           MW+ + KR SSR                      NFPEKI+      RHP   F+QVG F
Sbjct: 1   MWSKLAKRASSRRFILPSQSSTSLRFSHQH----NFPEKIL------RHPFSRFSQVGIF 50

Query: 61  TSKSKLGRSKFLISGDPFCFXXXXXXXXXXXXLKLARGYASVA-EAIESSDAEYDYSASX 119
           TS+ KLGRS F  S  PF F            L   R Y SVA EAIES+D E D S S 
Sbjct: 51  TSEYKLGRSNFSFSEHPFSFSSIS--------LNHFRTYGSVAAEAIESTDTEDDCSGSE 102

Query: 120 XXXXXXXXXXXXXXXXXXXXXXXXMDGGMTSYKYKMLKKRQIKMETEAWEDAAREYQELL 179
                                         SYKYKML++RQIK+ETEAWE+AAREYQELL
Sbjct: 103 EVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELL 162

Query: 180 EDMRKQKLAPNLPYMKSLFLGWFEPLRNAIVAEQELCKDTRLRLTHGPYFNELPADMMAV 239
           EDMR+QKLAPNLPYMKSLFLGWFEPL+NAI A+QE+CKDT+ RL+H PYFNELP DMMAV
Sbjct: 163 EDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAV 222

Query: 240 ITMHKLMGLLMTNTNGVGSAKVVQGASQIGEAIEHEA 276
           ITMHKLMGLLMTN+NGVGSA+V+Q A QIGEAIEHE 
Sbjct: 223 ITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEV 259