Miyakogusa Predicted Gene

Lj0g3v0037729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0037729.1 Non Characterized Hit- tr|G7ZZ86|G7ZZ86_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,45.16,0.0000003,coiled-coil,NULL; seg,NULL,CUFF.1694.1
         (904 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088965.1 | mediator of RNA polymerase II transcription su...    64   9e-10
Medtr2g013160.1 | mediator of RNA polymerase II transcription su...    59   3e-08

>Medtr4g088965.1 | mediator of RNA polymerase II transcription subunit
            16 | HC | chr4:35573049-35558652 | 20130731
          Length = 1245

 Score = 63.5 bits (153), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 6/93 (6%)

Query: 773  KSRLLAVEPYQGFKVDSHGNLKEILSMGVEEYELEKVLEIPQQNQFSFQVGSSNIQGWLH 832
            +SRL +    QG+  +    +K +  M +E       L+ P       QVGSSNIQ  LH
Sbjct: 997  RSRLGSGNAGQGYTFE---EVKVLFMMLMELCRRTSTLQHPLPIS---QVGSSNIQVRLH 1050

Query: 833  YNVRNYTVLPEVVETSLSPHRQNIPHLRDANAA 865
            Y   NYTVLPEVVE SL PH QN+P  R A+AA
Sbjct: 1051 YIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1083


>Medtr2g013160.1 | mediator of RNA polymerase II transcription
           subunit 16 | HC | chr2:3502342-3493885 | 20130731
          Length = 1086

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 33/43 (76%)

Query: 821 QVGSSNIQGWLHYNVRNYTVLPEVVETSLSPHRQNIPHLRDAN 863
           QVGSSNIQ  LHY   +YTVLPEVVE SL P+ QN+P L DA+
Sbjct: 886 QVGSSNIQVQLHYIEGSYTVLPEVVEASLGPYMQNMPRLGDAD 928