Miyakogusa Predicted Gene

Lj0g3v0036669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0036669.1 Non Characterized Hit- tr|I1LBN3|I1LBN3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7887
PE=,89.23,0,PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE CATALYTIC
SUBUNIT,NULL; AIR carboxylase,N5-carboxyaminoimid,CUFF.1615.1
         (196 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g080500.1 | phosphoribosylaminoimidazole carboxylase | HC ...   270   8e-73

>Medtr1g080500.1 | phosphoribosylaminoimidazole carboxylase | HC |
           chr1:35857963-35851754 | 20130731
          Length = 641

 Score =  270 bits (689), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 148/196 (75%)

Query: 1   MRKQRKMGHITIVGTSLGNIESNLATIVERNKFDDKTAVAPNVGIIMGSDSDLPVMKSAA 60
           MRKQRKMGHITIVG SL N++ NLATI+E    DDKTAVAP VGIIMGSDSDLPVMK AA
Sbjct: 432 MRKQRKMGHITIVGPSLSNLDGNLATILEGKTLDDKTAVAPRVGIIMGSDSDLPVMKCAA 491

Query: 61  EVLEMFGVSHEVRIVSAHRTPELMFSYASSAHDRGVKVIIXXXXXXXHLPGMVAALTPLP 120
           E+LE FGV HEV IVSAHRTPE MFSYAS A +RG+KVII       HLPGMVAA+TPLP
Sbjct: 492 EILEKFGVPHEVEIVSAHRTPERMFSYASFASERGIKVIIAGAGGAAHLPGMVAAITPLP 551

Query: 121 VIGVPVRAXXXXXXXXXXXIVQMPRGVPXXXXXXXXXXXXGLLAVRMLGVANENLLSRMS 180
           VIGVPVR            IVQMPRGVP            GLLAVR+LGVA+ENLLSRMS
Sbjct: 552 VIGVPVRGSSLDGVDSLLSIVQMPRGVPVATIAINNATNAGLLAVRILGVADENLLSRMS 611

Query: 181 QYQEDQKESVLIKGDK 196
           QY EDQKESVL KGDK
Sbjct: 612 QYLEDQKESVLQKGDK 627