Miyakogusa Predicted Gene

Lj0g3v0036589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0036589.1 Non Characterized Hit- tr|F6HVK5|F6HVK5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,81.94,3e-19,seg,NULL; PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE
ATPASE-SUBUNIT,NULL; no description,Pre-ATP-grasp,gene.g2573.t1.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g080500.1 | phosphoribosylaminoimidazole carboxylase | HC ...   129   9e-31

>Medtr1g080500.1 | phosphoribosylaminoimidazole carboxylase | HC |
           chr1:35857963-35851754 | 20130731
          Length = 641

 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 98/163 (60%), Gaps = 27/163 (16%)

Query: 1   MLHSARTVLSGHTSTSAFAFKPCHP----------STNKASSSLGFYMDQPPHLSSSLKL 50
           MLH   TV S HT TS F FK  HP          S++ +SSSL FYM+QP  LS   KL
Sbjct: 1   MLHIVPTVSSRHTVTSFFPFKSTHPLSSSSSSSSSSSSSSSSSLAFYMEQPNLLS--FKL 58

Query: 51  KQCRHPHLTIQASNQQGAVSSRLSFASLLMGNDEVPVHGLSEAXXXXXXXXXXXRMLCQA 110
           K    PH   QA+    AVS R         N+E  VHGLSE            RMLCQA
Sbjct: 59  KHSHQPH---QAN---AAVSPR---------NEESVVHGLSETVVGVLGGGQLGRMLCQA 103

Query: 111 ASKMAIKVMVLDPQENCPASSLSYQHRVGSFDDSATVEEFAKR 153
           AS+MAIKV+VLDPQ+NCPASS S+ H VGSFDDSATV+EFAKR
Sbjct: 104 ASQMAIKVVVLDPQDNCPASSFSHHHMVGSFDDSATVQEFAKR 146