Miyakogusa Predicted Gene

Lj0g3v0036229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0036229.1 tr|Q7XC52|Q7XC52_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=OSJNBb0089A17.6 PE=4
SV=,30.42,4e-18,seg,NULL; coiled-coil,NULL,gene.g2551.t1.1
         (506 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g100530.1 | transmembrane protein, putative | HC | chr4:41...   288   9e-78
Medtr7g007880.1 | transmembrane protein, putative | HC | chr7:17...   114   2e-25

>Medtr4g100530.1 | transmembrane protein, putative | HC |
           chr4:41445121-41447224 | 20130731
          Length = 483

 Score =  288 bits (737), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 181/368 (49%), Positives = 217/368 (58%), Gaps = 72/368 (19%)

Query: 16  EQNKEDPNKFYHHFLYKAAIVLIFFVILPLFPSQAPEFINQSLFARNWEFLHLLFVGIAI 75
           +QN+++PNKF+++F YKA IVLIFFVILPL PSQAPEFI+Q+L  RNWE LHLLFVGIAI
Sbjct: 21  KQNQQEPNKFHYNFAYKATIVLIFFVILPLLPSQAPEFISQNLLTRNWELLHLLFVGIAI 80

Query: 76  SYGLFSRRNNETEKE--NNSKFDSAQSLVSKFLQVSSFFEDDAESENPSESDETTKIYTW 133
           SYGLFSRRN E +K+  NN+KFD+AQSLVS+FLQVSSFFED+ + +N SES++  KI TW
Sbjct: 81  SYGLFSRRNQEPDKDNNNNTKFDNAQSLVSRFLQVSSFFEDEVDHQNQSESEDINKIQTW 140

Query: 134 S--NQHHRNEPVIVVAKQ-----------------RNEKPLLLPVRSLKSRLVDDPEAAE 174
           S  NQH+RN+P+++VA Q                  NEKPLLLPVRSLKS L DD     
Sbjct: 141 SNQNQHYRNKPMVIVAPQVQQLQNSVFEDEQSSFNENEKPLLLPVRSLKSLLSDD----- 195

Query: 175 SCTEPFSVSRSNSRTGSKRFSSN-LNRARN-AEVEGPGSTXXXXXXXXXXXXXLPSPIPW 232
            C          S+T +KRFSSN  NR RN AE E  G               LPSPIPW
Sbjct: 196 DCVVQSQSVDGLSKTTTKRFSSNSFNRVRNYAEFE--GLVEDKLKQKEEENAVLPSPIPW 253

Query: 233 RSRSGK---MEPKQEVFDAPAPSSAFAEL-------ASKPSMEESEINKVESRSVKSQTQ 282
           RSRS     MEPKQE  +    +S   E        ASKPSM       V++ S+     
Sbjct: 254 RSRSASARMMEPKQEAIEKALKASMVMEPKQEANENASKPSM-------VKTSSI----- 301

Query: 283 NXXXXXXXXXXXXTKFTPMASSSSESLAKNTEDLLRKKGF-YKSCXXXXXXXXXMVFQKS 341
                         KFTP     SES+AKN+EDL++KK F YKS           +F KS
Sbjct: 302 --------------KFTP-----SESVAKNSEDLIKKKSFYYKSYPPPPPPPPPTMFYKS 342

Query: 342 VSFKPRNG 349
              K R G
Sbjct: 343 TFLKSRYG 350


>Medtr7g007880.1 | transmembrane protein, putative | HC |
           chr7:1736773-1733666 | 20130731
          Length = 919

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 75/113 (66%), Gaps = 2/113 (1%)

Query: 29  FLYKAAIVLIFFVILPLFPSQAPEFINQSLFARNWEFLHLLFVGIAISYGLFSRRNNETE 88
           F+ K   + IF ++LPLFPSQAPEF+NQ +  + WE LHLLF+GI ++YGLFSRRN E E
Sbjct: 28  FIIKFLFLAIFIIVLPLFPSQAPEFLNQPILTKLWELLHLLFIGIVVAYGLFSRRNAELE 87

Query: 89  KENNSKFDSAQSLVSKFLQVSSFFEDDAESENPSESDETTKIYTWSNQHHRNE 141
             N+S  +SA + VSKF   S+ F D+ E EN    DE   ++ W++  + NE
Sbjct: 88  T-NDSDNNSA-NYVSKFFPASTIFGDECEIENSCGFDENKMMHCWNDGSNSNE 138