Miyakogusa Predicted Gene

Lj0g3v0035849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0035849.1 tr|I3S150|I3S150_LOTJA Proteasome subunit beta
type OS=Lotus japonicus PE=2
SV=1,98.77,2e-39,PROTEASOME_B_2,Proteasome B-type subunit; N-terminal
nucleophile aminohydrolases (Ntn hydrolases),NU,CUFF.1569.1
         (82 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g088490.1 | proteasome beta type-3 subunit | HC | chr7:344...   162   5e-41
Medtr4g087680.1 | proteasome beta type-3 subunit | HC | chr4:344...   154   2e-38
Medtr2g098010.2 | proteasome subunit beta protein | HC | chr2:41...    48   2e-06
Medtr2g098010.1 | proteasome subunit beta protein | HC | chr2:41...    48   2e-06
Medtr5g079740.1 | proteasome subunit beta protein | HC | chr5:34...    48   2e-06

>Medtr7g088490.1 | proteasome beta type-3 subunit | HC |
          chr7:34472184-34477524 | 20130731
          Length = 204

 Score =  162 bits (411), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/82 (92%), Positives = 80/82 (97%)

Query: 1  MSIFEYNGSAIVAMVGKNCFAIASDRRLGVQLQTVATDFQRIFKVHDKLFIALSGLATDA 60
          MSIFEYNGSA+VAMVGKNCFAIASDRRLGVQLQT+ATDFQRI K+HDKLFI LSGLATD+
Sbjct: 1  MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDS 60

Query: 61 QTLYQRLVFRHKLYQLREERDM 82
          QTLYQRLVFRHKLYQLREERDM
Sbjct: 61 QTLYQRLVFRHKLYQLREERDM 82


>Medtr4g087680.1 | proteasome beta type-3 subunit | HC |
          chr4:34444534-34453304 | 20130731
          Length = 204

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 79/82 (96%)

Query: 1  MSIFEYNGSAIVAMVGKNCFAIASDRRLGVQLQTVATDFQRIFKVHDKLFIALSGLATDA 60
          M+IF++NGSA+VAMVGKNCFAIASDRRLGVQLQT+ATDFQRI K+HDKL+I LSGLATD+
Sbjct: 1  MTIFKHNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLYIGLSGLATDS 60

Query: 61 QTLYQRLVFRHKLYQLREERDM 82
          QTLYQRLVFRHKLYQLREE DM
Sbjct: 61 QTLYQRLVFRHKLYQLREELDM 82


>Medtr2g098010.2 | proteasome subunit beta protein | HC |
          chr2:41877122-41871507 | 20130731
          Length = 223

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query: 2  SIFEYNGSAIVAMVGKNCFAIASDRRLGVQLQTVATDFQRIFKVHDKLFIALSGLATDAQ 61
          S ++ NG + VA+ G +   IA+D R+      +  D+ +I  + +K  +A SG   D +
Sbjct: 9  SPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADVK 68

Query: 62 TLYQRLVFRHKLYQLREERDM 82
           L + L  RH  YQ +  + M
Sbjct: 69 ALQKVLSARHLTYQHQHNKQM 89


>Medtr2g098010.1 | proteasome subunit beta protein | HC |
          chr2:41876193-41871507 | 20130731
          Length = 223

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query: 2  SIFEYNGSAIVAMVGKNCFAIASDRRLGVQLQTVATDFQRIFKVHDKLFIALSGLATDAQ 61
          S ++ NG + VA+ G +   IA+D R+      +  D+ +I  + +K  +A SG   D +
Sbjct: 9  SPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADVK 68

Query: 62 TLYQRLVFRHKLYQLREERDM 82
           L + L  RH  YQ +  + M
Sbjct: 69 ALQKVLSARHLTYQHQHNKQM 89


>Medtr5g079740.1 | proteasome subunit beta protein | HC |
          chr5:34103057-34099931 | 20130731
          Length = 223

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query: 2  SIFEYNGSAIVAMVGKNCFAIASDRRLGVQLQTVATDFQRIFKVHDKLFIALSGLATDAQ 61
          S ++ NG + VA+ G +   IA+D R+      +  D+ +I  + +K  +A SG   D +
Sbjct: 9  SPYDNNGGSCVAIAGSDYCVIAADTRMSTGYNILTRDYSKISHLAEKCVMASSGFQADVK 68

Query: 62 TLYQRLVFRHKLYQLREERDM 82
           L + L  RH  YQ +  + M
Sbjct: 69 ALQKVLSARHLTYQHQHNKQM 89