Miyakogusa Predicted Gene

Lj0g3v0034789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0034789.1 Non Characterized Hit- tr|I1KA79|I1KA79_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.30198 PE,87.04,4e-19,
,NODE_54983_length_202_cov_62.004951.path2.1
         (56 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g072620.1 | YbaK/proline-tRNA ligase associated domain pro...    97   3e-21

>Medtr3g072620.1 | YbaK/proline-tRNA ligase associated domain
           protein | HC | chr3:32674759-32678924 | 20130731
          Length = 329

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/54 (87%), Positives = 48/54 (88%)

Query: 1   MSISLNARDLDIFIKSIGRDPSYVDLEANPTVGKDQPPDLAALVPSGSIALPDQ 54
           MSISLN R LD F+KSIGRDPSYVDLEANP VGKDQPPDLAALVPS SI LPDQ
Sbjct: 137 MSISLNVRGLDKFLKSIGRDPSYVDLEANPAVGKDQPPDLAALVPSSSIILPDQ 190