Miyakogusa Predicted Gene

Lj0g3v0033799.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0033799.2 Non Characterized Hit- tr|I1KCF6|I1KCF6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,83.91,0,no
description,NULL; NifU_N,NIF system FeS cluster assembly, NifU,
N-terminal; iscU: FeS cluster ass,CUFF.1517.2
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g077720.1 | iron-sulfur cluster assembly protein IscU | HC...   271   2e-73
Medtr3g077730.1 | iron-sulfur cluster assembly protein IscU | HC...   197   4e-51

>Medtr3g077720.1 | iron-sulfur cluster assembly protein IscU | HC |
           chr3:34952962-34954984 | 20130731
          Length = 164

 Score =  271 bits (693), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 149/170 (87%), Gaps = 9/170 (5%)

Query: 1   MMRIAASAKRIIGTASSSLEAPHPAIRVLPRLYHERVVDHYDNPRNVGSFDKNDPNVGTG 60
           M+RIA   K+++ TAS   E P+PAIRVLPR YHERVVDHYDNPRNVGSFDKNDP VGTG
Sbjct: 1   MLRIA---KKLVQTAS--FETPNPAIRVLPRFYHERVVDHYDNPRNVGSFDKNDPTVGTG 55

Query: 61  LVGAPACGDVMKLQIKVDEKTGKIVDACFKTFGCGSAIASSSVATEWVIGKEMEEVLTIK 120
           LVGAPACGDVMKLQIKVDE  GKI+DA FKTFGCGSAIASSSVATEWV GK+MEEVLTIK
Sbjct: 56  LVGAPACGDVMKLQIKVDE-NGKIIDARFKTFGCGSAIASSSVATEWVKGKQMEEVLTIK 114

Query: 121 NTEIAKHLSLPPVKLHCSMLAEDAMKAAVKDLVSKRGP---ASGEKAATA 167
           NTEIAKHLSLPPVKLHCSMLAEDA+KAAVKD  +KR     A+G+K+ATA
Sbjct: 115 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASATAATGDKSATA 164


>Medtr3g077730.1 | iron-sulfur cluster assembly protein IscU | HC |
           chr3:34956954-34958945 | 20130731
          Length = 160

 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 109/126 (86%), Gaps = 3/126 (2%)

Query: 37  VVDHYDNPRNVGSFDKNDPNVGTGLVGAPACG--DVMKLQIKVDEKTGKIVDACFKTFGC 94
           VVDHY+ PRNVGSFDKN+P+VG GLVGAPACG  DVMKL IKV E  GKIV+ACFKTFGC
Sbjct: 5   VVDHYEKPRNVGSFDKNNPDVGIGLVGAPACGEGDVMKLHIKVVE-NGKIVEACFKTFGC 63

Query: 95  GSAIASSSVATEWVIGKEMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAMKAAVKDLVS 154
           GS IASSSVATEWV  K +EEVLTIKNTEI KHL+LPPVKLHCSMLAEDA+KAAVKD  +
Sbjct: 64  GSTIASSSVATEWVKRKTIEEVLTIKNTEIPKHLNLPPVKLHCSMLAEDAIKAAVKDYEA 123

Query: 155 KRGPAS 160
           KR  A+
Sbjct: 124 KRASAT 129