Miyakogusa Predicted Gene

Lj0g3v0033239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0033239.1 Non Characterized Hit- tr|I1JWX8|I1JWX8_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,75.38,2e-18,
,NODE_45316_length_451_cov_132.219513.path1.1
         (65 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099990.1 | ABC transporter A family protein | HC | chr3:4...    94   3e-20
Medtr3g437990.1 | ABC transporter A family protein | HC | chr3:1...    84   4e-17

>Medtr3g099990.1 | ABC transporter A family protein | HC |
           chr3:45894138-45888396 | 20130731
          Length = 960

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 52/65 (80%), Gaps = 4/65 (6%)

Query: 1   MVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRNLGRSESVHGVVIDPSQVS 60
           MV+V+WEQDDTGALCI+GHSQK P+PQ ++L ++PT R      RS  VHGVVIDPSQVS
Sbjct: 900 MVQVHWEQDDTGALCIAGHSQKAPVPQKIQLPSSPTARQR----RSALVHGVVIDPSQVS 955

Query: 61  SVNFQ 65
            VNFQ
Sbjct: 956 LVNFQ 960


>Medtr3g437990.1 | ABC transporter A family protein | HC |
           chr3:12978184-12986453 | 20130731
          Length = 958

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)

Query: 1   MVEVYWEQDDTGALCISGHSQKVPIPQSVEL-STTPTTRPHRNLGRSESVHGVVIDPSQV 59
           MVEV+WEQDDTG LC++GHSQK PIPQ+++L S T   R      RS SVHGVVIDP+QV
Sbjct: 899 MVEVHWEQDDTGTLCVAGHSQKAPIPQNIQLPSATARQR------RSGSVHGVVIDPNQV 952

Query: 60  SSVNFQ 65
           SS +FQ
Sbjct: 953 SSDSFQ 958