Miyakogusa Predicted Gene

Lj0g3v0033009.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0033009.1 tr|F2DY84|F2DY84_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,27.96,1e-17,SUBFAMILY NOT NAMED,NULL; APOSPORY-ASSOCIATED PROTEIN
C-RELATED,NULL; seg,NULL; no description,Glyco,CUFF.1453.1
         (386 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g032880.1 | NDH-dependent cyclic electron flow protein, pu...   534   e-152
Medtr7g085490.1 | NDH-dependent cyclic electron flow protein, pu...   122   5e-28

>Medtr6g032880.1 | NDH-dependent cyclic electron flow protein,
           putative | HC | chr6:10218946-10221178 | 20130731
          Length = 386

 Score =  534 bits (1376), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/394 (70%), Positives = 312/394 (79%), Gaps = 16/394 (4%)

Query: 1   MALSSIFCSTRLISTSLVTVNSA-SHTC-----YVPHKQRKSEFPLPAVASVPYQPINYD 54
           MA +S+FCS   I  +  T N+  S  C     Y+   Q K EF LP VASVPYQPINYD
Sbjct: 1   MASTSLFCSNIFIPKT--TKNTPPSQLCLPFPSYIQQNQYKREFHLPKVASVPYQPINYD 58

Query: 55  YLQEEFNGLGVTFEEAGGDSCMAKMELKNGSTATLLLPSGLITSYKAPMWHGGKVELLHT 114
           YL++EFNG GVTFEE GG SCMAKMELKNGS AT+LLPSGLITSYKAPMWHGGKVELL+T
Sbjct: 59  YLEQEFNGHGVTFEEVGG-SCMAKMELKNGSIATMLLPSGLITSYKAPMWHGGKVELLNT 117

Query: 115 AVSEGEYGHAIIQGGVSLNFNFQTIHDDDGE-SWSPTNWVLHNIKGNAEESIQVELINRA 173
           AVSEGE+G A+IQGGVSLNFN QT  D+D E SWSP+NWVLHNIKGN+EESIQV LIN+ 
Sbjct: 118 AVSEGEFGDAVIQGGVSLNFNLQTHDDNDDEVSWSPSNWVLHNIKGNSEESIQVVLINKG 177

Query: 174 AEDKIGLKYIVTLEEDVLSSELEISNPKSLPLQMIGSILSHLTVSTPEATYAIGLERSNY 233
             DKIGLKYIVTLEED L SELEISN  SLPLQM GSILSHLTVSTPEATYAIGLERSNY
Sbjct: 178 PYDKIGLKYIVTLEEDGLGSELEISNSNSLPLQMTGSILSHLTVSTPEATYAIGLERSNY 237

Query: 234 CIKPPFESGFVLSPPDSGQEEGDGKIWNSSPLKQLFPRWGANSQNXXXXXXXXXXXXXXX 293
             +PP ES F+LSPPDS +E+G GKIW SS +KQ  P WG +SQN               
Sbjct: 238 YSRPPIESEFILSPPDSIEEKGFGKIWKSS-VKQFLPSWGTDSQN----NEAEDSEDMSG 292

Query: 294 XXXXXYKQLRDKLSLVYTNAPRSFTVIDRGRRNSVVIGRNGFEETYLYSPGSR-VESYSK 352
                YKQL++++SLVYTNAPRSFT+IDRGRRNSV++GRNGF+ETYL+SPGS  +ESYSK
Sbjct: 293 EEMDTYKQLKERISLVYTNAPRSFTLIDRGRRNSVLVGRNGFDETYLFSPGSSGIESYSK 352

Query: 353 DAYICVGQAAVLQPIVLGPEEVWKGGQYLQNPNL 386
            AYICVGQAAVLQPIVL P++VWKGG YL NPN+
Sbjct: 353 YAYICVGQAAVLQPIVLSPQDVWKGGAYLHNPNI 386


>Medtr7g085490.1 | NDH-dependent cyclic electron flow protein,
           putative | HC | chr7:33122962-33120961 | 20130731
          Length = 355

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 161/335 (48%), Gaps = 17/335 (5%)

Query: 56  LQEEFNGLGVTFEEAGGDSCMAKMELKNGSTATLLLPSGLITSYKAPM-WHGGKVELLHT 114
           L ++F   G+ F E+     + ++ ++NGS+ +L LP   +TSYK  + W    +E L  
Sbjct: 33  LNDKFGRKGIKFLESNSIP-IVELTVRNGSSLSLRLPDAHVTSYKPKVFWKDDGLEELLY 91

Query: 115 AVSEGEYGHAIIQGGVSLNFNFQTIHDDDGESWSPT-NWVLHNIKGNAEESIQVELINRA 173
            +   E G    +GG+ L  N + +     E    T  W + ++  +A +++QVELI  +
Sbjct: 92  TIPANETGLYKAKGGIGLVLN-EVLQPGAKELLPSTLEWTVKDVDYDAIDALQVELI--S 148

Query: 174 AEDKIGLKYIVTLEEDVLSSELEISNPKSLPLQMIGSILSHLTVSTPEATYAIGLERSNY 233
                 + YIV+L    +++ + + N    P+ +  +ILSH            GL+  +Y
Sbjct: 149 TNRFFDMTYIVSLYPVSMATAVIVKNKSPKPVTLTNAILSHFRFKRRGGAAIKGLQTCSY 208

Query: 234 CIKPPFESGF-VLSPPDSGQEEGDGKI-WNSSPLKQLFPRWGANSQNXXXXXXXXXXXXX 291
           C  PP +S F +L+P ++ + E    I + + P  ++ P  G+ +Q              
Sbjct: 209 CSHPPLDSPFQILTPSEAMKSESQRLISFGAEP--EMKP--GSWTQQGVPITLLENKMSR 264

Query: 292 XXXXXXXYKQLRDKLSLVYTNAPRSFTVIDRGRRNSVVIGRNGFEETYLYSPGSRVESYS 351
                      +++    Y   P  + +ID+GR     + R GFE+ Y+ SPGS  + Y 
Sbjct: 265 VFAAPP-----KERTKAFYNTPPSKYEIIDQGREIFYRVIRMGFEDIYVSSPGSMSDKYG 319

Query: 352 KDAYICVGQAAVLQPIVLGPEEVWKGGQYLQNPNL 386
           +D ++C G A++L+P+ + P E ++G Q +++ NL
Sbjct: 320 RDYFVCTGPASILEPVTVNPGEEFRGAQVIEHDNL 354