Miyakogusa Predicted Gene

Lj0g3v0024529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0024529.1 tr|B9MUB0|B9MUB0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_917368 PE=4
SV=1,70.49,0,seg,NULL; PRLI-INTERACTING FACTOR L,NULL;
COBW-RELATED,NULL; Cobalamin synthesis protein cobW C-term,CUFF.1380.1
         (424 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g071110.1 | prli-interacting factor L-like protein | HC | ...   604   e-173
Medtr1g115505.1 | cobalamin biosynthesis protein | HC | chr1:521...   401   e-112
Medtr5g044050.1 | cobalamin biosynthesis protein | HC | chr5:193...   220   2e-57

>Medtr8g071110.1 | prli-interacting factor L-like protein | HC |
           chr8:30172455-30180031 | 20130731
          Length = 407

 Score =  604 bits (1558), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 313/423 (73%), Positives = 334/423 (78%), Gaps = 22/423 (5%)

Query: 5   YMALRTTAKTLLGVAHSPVPHSCHPLSL--IRTLHSFVSRHPSFHHPYSGTFSFFFRGMA 62
           YM +  + KT      S       PL L  I TLHSFVS +  F   Y G+F +      
Sbjct: 4   YMTIANSVKTFFRTVQSS------PLQLRSITTLHSFVSPNNFF---YYGSFRYI----- 49

Query: 63  SASAPNHNLDEAASLAPDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEV 122
             SAP H    A   + DNR+PAT+ITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEV
Sbjct: 50  -NSAPTH----AEEASVDNRIPATIITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEV 104

Query: 123 DIDGSLVASHSSVS-EDIIMVNNGCLCCTVRGDLVKMLLELARKKRDVIDHIVIETTGLA 181
           DIDGSLVASHSSV+ EDIIMVNNGCLCCTVRGDLVKMLLEL RKKRD  DHIVIETTGLA
Sbjct: 105 DIDGSLVASHSSVNGEDIIMVNNGCLCCTVRGDLVKMLLELVRKKRDKFDHIVIETTGLA 164

Query: 182 KPGPVIETFCSDELVSQYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRII 241
           KP PVIETF SDELVS+YVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRII
Sbjct: 165 KPAPVIETFFSDELVSEYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRII 224

Query: 242 LNKIDLVSESELNALTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYDLQRIESDVHGEC 301
           LNKIDLV+ESELN LTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYD+QRIE++V GEC
Sbjct: 225 LNKIDLVTESELNMLTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYDIQRIEAEVEGEC 284

Query: 302 PSSASHQXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTLDLDEVDDWLERLVEEKGEDLY 361
           PS+ASH                            AEGTLD DEV+DWLERLVEEKGEDLY
Sbjct: 285 PSTASHPDDCGHEHKGHHHHDHVHDSAVSSVSIVAEGTLDRDEVEDWLERLVEEKGEDLY 344

Query: 362 RMKGVLSVDGSDQRYVLQGVHSILDGSKGKEWEPEEKRINKLVFIGRNLDETTLRKGFRG 421
           RMKGVL+VDGS+QRYV QGVHS+LD S GK W+P EKRINKLVFIGRNLDET LRKGF+G
Sbjct: 345 RMKGVLAVDGSEQRYVFQGVHSMLDDSPGKTWQPNEKRINKLVFIGRNLDETALRKGFKG 404

Query: 422 CLV 424
           CLV
Sbjct: 405 CLV 407


>Medtr1g115505.1 | cobalamin biosynthesis protein | HC |
           chr1:52194306-52199057 | 20130731
          Length = 449

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/372 (52%), Positives = 260/372 (69%), Gaps = 19/372 (5%)

Query: 72  DEAASLAPDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVAS 131
           D +  + PDNR+PAT+ITGFLGSGKTTLLNHILT++HGKRIAVIENEFGE+DIDGSLVA+
Sbjct: 78  DVSTVIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAA 137

Query: 132 HSSVSEDIIMVNNGCLCCTVRGDLVKMLLELARKKRDVIDHIVIETTGLAKPGPVIETFC 191
            ++ +EDI+++NNGCLCCTVRGDLV+M+ EL   K+   DHIVIETTGLA P P+I+TF 
Sbjct: 138 KTAGAEDIMLLNNGCLCCTVRGDLVRMISELVTSKKGKFDHIVIETTGLANPAPIIQTFY 197

Query: 192 SDELVSQYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVSES 251
           +++ +   VKLDGVVTLVD KHA  HL+EVKP+ VVNEAVEQ+AYADRII+NK DLV ES
Sbjct: 198 AEDTIFNEVKLDGVVTLVDAKHAGLHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLVGES 257

Query: 252 ELNALTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYDLQRIESDVHGECPSSASHQXXX 311
           ++ +L ++I+ IN +A +K+ ++G V++D+VLG+GG+DL+RIES V+ E      H    
Sbjct: 258 DITSLVQRIRKINSLANLKRTEYGKVNLDYVLGIGGFDLERIESAVNDEGSKDEDHAHSH 317

Query: 312 XXXXXXXXXXXXXXXXX-------------------XXXXXXXAEGTLDLDEVDDWLERL 352
                                                       EG LDL++ + WL  L
Sbjct: 318 DHDHEHHHHDHHHHHHEDSHDHKHDHHAHDHSHDPGVSSVSIVCEGNLDLEKANMWLGTL 377

Query: 353 VEEKGEDLYRMKGVLSVDGSDQRYVLQGVHSILDGSKGKEWEPEEKRINKLVFIGRNLDE 412
           + E+ +D+YRMKG+LSV G ++R+V QGVH I  GS  + W+P+E R NK+VFIG+NL+ 
Sbjct: 378 LMERSDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPERLWQPDEPRTNKIVFIGKNLNA 437

Query: 413 TTLRKGFRGCLV 424
             L KGF+ CL+
Sbjct: 438 EELEKGFKTCLL 449


>Medtr5g044050.1 | cobalamin biosynthesis protein | HC |
           chr5:19367945-19374070 | 20130731
          Length = 366

 Score =  220 bits (560), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 201/361 (55%), Gaps = 24/361 (6%)

Query: 69  HNLDEAASLAPDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGE-VDIDGS 127
           HN DE  S++  + V  T+ITG+LG+GK+TL+NHIL SQHGKRIAVI NEFGE + ++ +
Sbjct: 18  HNNDE--SISQQSSVGVTLITGYLGAGKSTLVNHILNSQHGKRIAVILNEFGEEIGVERA 75

Query: 128 LVASHSS--VSEDIIMVNNGCLCCTVRGDLVKMLLELARKKRDVIDHIVIETTGLAKPGP 185
           L+    S  V E+ + + NGC+CCTV+  LV+ L +L ++K + +DHI++ETTGLA P P
Sbjct: 76  LINEGESGAVVEEWVELANGCICCTVKHSLVQALEQLVQRK-ERLDHILLETTGLANPAP 134

Query: 186 VIETFCSDELVSQYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 245
           +      DE +   VKLD +VT+VD K+    L E +      EA  Q+A+AD +ILNK+
Sbjct: 135 LASILWLDEQLESDVKLDSIVTVVDAKNVRFQLKEHRGSSSFPEAYFQIAFADIVILNKV 194

Query: 246 DLVS---ESELNALTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYDLQRIESDVHGECP 302
           DLVS      L  L ++I +IN + +I  +    VD+  +L    YD             
Sbjct: 195 DLVSAEGSGALEELEEEIHNINTLVEIIHSVRCQVDLSKILNRHAYD------------T 242

Query: 303 SSASHQXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTLDLDEVDDWLERLVEEKGEDL-- 360
           + A+H                              GT+DLD+   WLE ++ EK  D+  
Sbjct: 243 AHAAHLEALLEESRSLSTKKLHDSGVRTICICET-GTIDLDKTRIWLEEILWEKKYDMDV 301

Query: 361 YRMKGVLSVDGSDQRYVLQGVHSILDGSKGKEWEPEEKRINKLVFIGRNLDETTLRKGFR 420
           YR KGVL+V  SD+ + LQ V  + +    ++W+ EE R+NK+VFIG NL E  L    +
Sbjct: 302 YRCKGVLNVQNSDELHTLQAVRELYEIVPARKWKKEENRMNKIVFIGHNLKEDVLINSLK 361

Query: 421 G 421
            
Sbjct: 362 A 362