Miyakogusa Predicted Gene
- Lj0g3v0024429.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0024429.2 tr|D7LAT4|D7LAT4_ARALL Zinc finger family protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_,60.49,9e-19,
,CUFF.1376.2
(84 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g114240.2 | RING-finger ubiquitin ligase | HC | chr1:51552... 118 1e-27
Medtr1g114240.1 | RING-finger ubiquitin ligase | HC | chr1:51552... 117 2e-27
Medtr8g036640.1 | E3 ubiquitin ligase BIG brother, putative | HC... 62 1e-10
Medtr4g065670.1 | E3 ubiquitin ligase BIG brother-like protein |... 60 3e-10
Medtr8g037150.1 | E3 ubiquitin ligase BIG brother-like protein |... 60 3e-10
Medtr4g065670.2 | E3 ubiquitin ligase BIG brother-like protein |... 59 8e-10
Medtr7g100950.2 | zinc finger, C3HC4 type (RING finger) protein ... 46 9e-06
Medtr7g100950.1 | zinc finger, C3HC4 type (RING finger) protein ... 46 9e-06
>Medtr1g114240.2 | RING-finger ubiquitin ligase | HC |
chr1:51552982-51559455 | 20130731
Length = 339
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 62/74 (83%)
Query: 1 MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHG 60
M+EH NSQDA EDVD D LSYEELLAL E+VG ESRGL TDTIA LPSV YK GSDQ G
Sbjct: 224 MEEHAANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKAGSDQLG 283
Query: 61 SNDSCVICRLDYED 74
SNDSCVICR+DYED
Sbjct: 284 SNDSCVICRVDYED 297
>Medtr1g114240.1 | RING-finger ubiquitin ligase | HC |
chr1:51552982-51559455 | 20130731
Length = 333
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 62/74 (83%)
Query: 1 MDEHGNNSQDAREDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHG 60
M+EH NSQDA EDVD D LSYEELLAL E+VG ESRGL TDTIA LPSV YK GSDQ G
Sbjct: 218 MEEHAANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKAGSDQLG 277
Query: 61 SNDSCVICRLDYED 74
SNDSCVICR+DYED
Sbjct: 278 SNDSCVICRVDYED 291
>Medtr8g036640.1 | E3 ubiquitin ligase BIG brother, putative | HC |
chr8:13654196-13648887 | 20130731
Length = 286
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 12 REDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS--DQHGSNDSCVICR 69
++++D D ++YEELL L E VG +SRGLP + I LP+ KYK GS + S CV+C+
Sbjct: 139 QDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFGSLFKRKNSGKRCVVCQ 198
Query: 70 LDY 72
+ Y
Sbjct: 199 MTY 201
>Medtr4g065670.1 | E3 ubiquitin ligase BIG brother-like protein | HC
| chr4:24500958-24495700 | 20130731
Length = 248
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 4 HGNNSQDAR----EDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTG--SD 57
H +NS D++ +++D D ++YEELL L E VG +SRGL + I+ LP K+K G
Sbjct: 129 HHSNSNDSQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKFKCGFFFR 188
Query: 58 QHGSNDSCVICRLDYE 73
+ N+ CVIC+++Y+
Sbjct: 189 KKSRNERCVICQMEYK 204
>Medtr8g037150.1 | E3 ubiquitin ligase BIG brother-like protein | HC
| chr8:13713285-13707137 | 20130731
Length = 247
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 12 REDVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGS--DQHGSNDSCVICR 69
++++D D ++YEELL L E VG +SRGLP + I LP+ KYK GS + S CV+C+
Sbjct: 141 QDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFGSLFKRKNSGKRCVVCQ 200
Query: 70 LDY 72
+ Y
Sbjct: 201 MTY 203
>Medtr4g065670.2 | E3 ubiquitin ligase BIG brother-like protein | HC
| chr4:24500918-24495700 | 20130731
Length = 255
Score = 59.3 bits (142), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 13/83 (15%)
Query: 4 HGNNSQDARE-----------DVDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKY 52
H +NS D+++ ++D D ++YEELL L E VG +SRGL + I+ LP K+
Sbjct: 129 HHSNSNDSQQLFYDLQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKF 188
Query: 53 KTG--SDQHGSNDSCVICRLDYE 73
K G + N+ CVIC+++Y+
Sbjct: 189 KCGFFFRKKSRNERCVICQMEYK 211
>Medtr7g100950.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:40711119-40708394 | 20130731
Length = 554
Score = 45.8 bits (107), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 15 VDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHGSNDSCVICRLDYED 74
+D+D +SYEELLAL E +G + GL D ++ + SDQ SCVIC +Y++
Sbjct: 451 MDIDNMSYEELLALGERIGQVNTGLSEDVLSKCVTETIYCSSDQCQDEGSCVICLEEYKN 510
Query: 75 V 75
+
Sbjct: 511 M 511
>Medtr7g100950.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:40710823-40708276 | 20130731
Length = 556
Score = 45.8 bits (107), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 15 VDLDGLSYEELLALVEIVGIESRGLPTDTIAYLPSVKYKTGSDQHGSNDSCVICRLDYED 74
+D+D +SYEELLAL E +G + GL D ++ + SDQ SCVIC +Y++
Sbjct: 453 MDIDNMSYEELLALGERIGQVNTGLSEDVLSKCVTETIYCSSDQCQDEGSCVICLEEYKN 512
Query: 75 V 75
+
Sbjct: 513 M 513