Miyakogusa Predicted Gene
- Lj0g3v0024349.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0024349.1 Non Characterized Hit- tr|G7IGQ6|G7IGQ6_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,30.6,0.000000003,DUF4283,Domain of unknown function DUF4283;
seg,NULL,CUFF.1372.1
(428 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g060030.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 69 9e-12
Medtr8g103960.1 | DUF4283 domain protein | LC | chr8:43764399-43... 59 7e-09
Medtr8g058470.1 | DUF4283 domain protein | LC | chr8:20135093-20... 59 1e-08
Medtr7g108760.1 | DUF4283 domain protein | LC | chr7:44356978-44... 59 1e-08
Medtr1148s0010.1 | DUF4283 domain protein | LC | scaffold1148:29... 57 3e-08
Medtr6g024400.1 | DUF4283 domain protein | LC | chr6:8739492-873... 56 6e-08
Medtr6g048830.1 | DUF4283 domain protein | LC | chr6:17708420-17... 54 2e-07
Medtr5g065250.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 4e-07
Medtr8g045280.1 | DUF4283 domain protein | LC | chr8:17686445-17... 52 7e-07
Medtr5g073130.1 | DUF4283 domain protein | LC | chr5:31119102-31... 52 9e-07
Medtr4g061490.1 | DUF4283 domain protein | LC | chr4:22746210-22... 51 2e-06
Medtr0073s0040.1 | DUF4283 domain protein | LC | scaffold0073:22... 50 5e-06
>Medtr2g060030.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr2:24731568-24734132 | 20130731
Length = 768
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 74 ELKDRMNCCAEGTVREVYTIEVLQAFVNEFHSFVIRVKPLSAREVLLEFQSADDMRVVLQ 133
E K + + C TV + I VLQ + + + + P+ A +VLL+ + D+ V+L
Sbjct: 331 EEKQQASRCMIATVLDGEAIPVLQRRIYDAGFENLDIIPMGADKVLLKTEDESDVNVILS 390
Query: 134 EGKEFLKQKFMVITPCTRQTRSRSSLVWLKVHRVPVYAWSYDFFDAVVCTFSRLVCLDHP 193
E F F I ++ R W++++ VP+ AW+ +FF V RL+ +D
Sbjct: 391 EAASFFASFFTNIVKWKKEVVFREKGAWVRIYGVPLQAWNLEFFKLCVYDCGRLLKVDDY 450
Query: 194 TSSRARFDVARVLV 207
T + RFD ARVL+
Sbjct: 451 TVDKLRFDYARVLI 464
>Medtr8g103960.1 | DUF4283 domain protein | LC |
chr8:43764399-43764821 | 20130731
Length = 140
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 156 RSSLVWLKVHRVPVYAWSYDFFDAVVCTFSRLVCLDHPTSSRARFDVARVLVDAPEPLVA 215
R W++++ +P++AW+ DFF V RL +D T + RFD ARVL+ P +
Sbjct: 10 RKRGAWVRIYGIPLHAWNVDFFKLCVYDCGRLFKVDDFTVDKVRFDYARVLISTPSLEII 69
Query: 216 AREISILLDGEII-MVVVE 233
E +L+DGE++ +VE
Sbjct: 70 NSEAKVLVDGELLDFTIVE 88
>Medtr8g058470.1 | DUF4283 domain protein | LC |
chr8:20135093-20137121 | 20130731
Length = 567
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%)
Query: 118 VLLEFQSADDMRVVLQEGKEFLKQKFMVITPCTRQTRSRSSLVWLKVHRVPVYAWSYDFF 177
V L +D+ V + F F I + Q WL+V+ VP++AW+ DFF
Sbjct: 38 VHLHCNGGEDIWQVFNDAVHFFGMLFDNIHKWSEQDTRYERGAWLRVYGVPIHAWNDDFF 97
Query: 178 DAVVCTFSRLVCLDHPTSSRARFDVARVLVDAPEPLVAAREISILLD 224
V R + LD T+ RAR D AR+L+ P+ + L+D
Sbjct: 98 RMCVNRVGRFIHLDECTADRARLDYARILILMPQIEIVNSTPEFLID 144
>Medtr7g108760.1 | DUF4283 domain protein | LC |
chr7:44356978-44354950 | 20130731
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%)
Query: 118 VLLEFQSADDMRVVLQEGKEFLKQKFMVITPCTRQTRSRSSLVWLKVHRVPVYAWSYDFF 177
V L +D+ V + F F I + Q WL+V+ VP++AW+ DFF
Sbjct: 38 VHLHCNGGEDIWQVFNDAVHFFGMLFDNIHKWSEQDTRYERGAWLRVYGVPIHAWNDDFF 97
Query: 178 DAVVCTFSRLVCLDHPTSSRARFDVARVLVDAPEPLVAAREISILLD 224
V R + LD T+ RAR D AR+L+ P+ + L+D
Sbjct: 98 RMCVNRVGRFIHLDECTADRARLDYARILILMPQIEIVNSTPEFLID 144
>Medtr1148s0010.1 | DUF4283 domain protein | LC |
scaffold1148:292-2316 | 20130731
Length = 604
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Query: 54 VAGNTHKSVATQDVIHNTSQELKDRMNCCAEGTVREVYT---IEVLQAFVNEFHSFVIRV 110
V G +S+ Q V N D + G + V I V+Q V + + +
Sbjct: 123 VTGGNVESLGAQGVGSNV-----DDLQWAWSGALANVVNGEAITVVQNRVEDAGFADLDI 177
Query: 111 KPLSAREVLLEFQSADDMRVVLQEGKEFLKQKFMVITPCTRQTRSRSSLVWLKVHRVPVY 170
PL A V L +S + +L E K F F I + WL+++ +P++
Sbjct: 178 IPLVADRVFLRSKSDKETFTMLGEAKYFFDHFFKNIVRWEKAVVPSRRGAWLRLYGIPLH 237
Query: 171 AWSYDFFDAVVCTFSRLVCLDHPTSSRARFDVARVLVDAPEPLVAAREISILLDGEII 228
AW+ + F V + D + + RFD A VL+ P + +R + +DG+++
Sbjct: 238 AWNENLFKLCVMECGSFLHTDDMSLDKGRFDYASVLISTPSLNIVSRVEGLSIDGQMV 295
>Medtr6g024400.1 | DUF4283 domain protein | LC |
chr6:8739492-8737037 | 20130731
Length = 680
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 143 FMVITPCTRQTRSRSSLVWLKVHRVPVYAWSYDFFDAVVCTFSRLVCLDHPTSSRARFDV 202
F + P ++ S WL+++ +P++ W+ +FF V + R + +D + R RFD
Sbjct: 313 FTDLVPWVKKVMSFQRGAWLRLYGIPLHTWNENFFKLCVLDYGRYLRVDSGSVDRDRFDY 372
Query: 203 ARVLVDAPEPLVAAREISILLDGEIIMVVV 232
ARVLV + ++ SIL+DG + V +
Sbjct: 373 ARVLVAFSSFEIIQKKESILIDGVTVEVKI 402
>Medtr6g048830.1 | DUF4283 domain protein | LC |
chr6:17708420-17709673 | 20130731
Length = 286
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 110 VKPLSAREVLLEFQSADDMRVVLQEGKEFLKQKFMVITPCTRQTRSRSSLVWLKVHRVPV 169
+ PL A +V + S D+ V+ ++F F I + VW++++ + +
Sbjct: 77 IIPLGADKVYIRCFSNTDVMQVIDTARDFFNLFFSHIVRWNKDIVKFERGVWVRIYGILI 136
Query: 170 YAWSYDFFDAVVCTFSRLVCLDHPTSSRARFDVARVLVDAPEPLVAAREISILLDGEIIM 229
+AW+ FF V R + LD+ T ++ RFD AR+L+ V I++DG ++
Sbjct: 137 HAWNSSFFKLAVLDCGRFLRLDNCTVAKDRFDHARILLAMSSLEVINVTEKIVIDGVLVK 196
Query: 230 V 230
V
Sbjct: 197 V 197
>Medtr5g065250.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr5:27420597-27418392 | 20130731
Length = 654
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 108 IRVKPLSAREVLLEFQSADDMRVVLQEGKEFLKQ----KFMVITPCTRQTRSRSSLVWLK 163
I+V PL + VLL+ +D V+ E + K F+ + P + + S W++
Sbjct: 215 IKVVPLGEKLVLLK----EDRNGVIAEARAAKKNWWCATFIEVVPWSPNIVATSRRTWVQ 270
Query: 164 VHRVPVYAWSYDFFDAVVCTFSRLVCLDHPTSSRARFDVARVLV 207
+ +P++ W DFF V F + D T++R R DVA +L+
Sbjct: 271 IRGIPLHIWKEDFFKKVRSFFGTFIDFDEETTTRNRMDVANLLI 314
>Medtr8g045280.1 | DUF4283 domain protein | LC |
chr8:17686445-17683874 | 20130731
Length = 804
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%)
Query: 92 TIEVLQAFVNEFHSFVIRVKPLSAREVLLEFQSADDMRVVLQEGKEFLKQKFMVITPCTR 151
I V+Q + + + V PL A V + S ++ ++ ++F F+ I +
Sbjct: 390 AIPVVQTRIEDAGFKDLDVIPLGADRVFMRSASDVEVSTIIAGARDFFDHIFLNIVRWEK 449
Query: 152 QTRSRSSLVWLKVHRVPVYAWSYDFFDAVVCTFSRLVCLDHPTSSRARFDVARVLV 207
Q+ WL+++ +P++AW+ +FF V R + D + + RFD AR+L+
Sbjct: 450 QSVPFQRGAWLRLYGIPLHAWNENFFKLCVFECGRFLRSDGCSMEKERFDYARILI 505
>Medtr5g073130.1 | DUF4283 domain protein | LC |
chr5:31119102-31120734 | 20130731
Length = 401
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%)
Query: 86 TVREVYTIEVLQAFVNEFHSFVIRVKPLSAREVLLEFQSADDMRVVLQEGKEFLKQKFMV 145
TV +I +LQ + + + + PL +V L ++ +L + +F F
Sbjct: 166 TVLNRDSIPLLQRRIFDAGFNTLEIIPLGDDKVFLRTTDDGEVSFLLSQVAKFFNNFFTS 225
Query: 146 ITPCTRQTRSRSSLVWLKVHRVPVYAWSYDFFDAVVCTFSRLVCLDHPTSSRARFDVARV 205
+ +R W++++ P+YAW+ FF V RL+ D T + R D ARV
Sbjct: 226 PVRWNKGIVNRERGAWVRIYGTPLYAWNIKFFKLCVLDSGRLLQADEFTFEKQRLDYARV 285
Query: 206 LVDAPEPLVAAREISILLDGEII 228
LV V I++D II
Sbjct: 286 LVATSTLEVINSMSKIVVDEAII 308
>Medtr4g061490.1 | DUF4283 domain protein | LC |
chr4:22746210-22743819 | 20130731
Length = 639
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%)
Query: 110 VKPLSAREVLLEFQSADDMRVVLQEGKEFLKQKFMVITPCTRQTRSRSSLVWLKVHRVPV 169
V P+ + V L D+ V E +F F I W++++ P
Sbjct: 312 VAPMGSDRVFLYCMGDVDIWNVFNEAVDFFSMMFSDIHKWVLDDEKYERGAWIRIYGTPA 371
Query: 170 YAWSYDFFDAVVCTFSRLVCLDHPTSSRARFDVARVLVDAPEPLVAAREISILLDGE 226
+AW+ FF R + D T RAR D ARVL+ V ++L+DGE
Sbjct: 372 HAWNESFFKICASGCGRYIRSDDCTVDRARLDYARVLISTEILEVINVSSAVLIDGE 428
>Medtr0073s0040.1 | DUF4283 domain protein | LC |
scaffold0073:22485-21368 | 20130731
Length = 344
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%)
Query: 85 GTVREVYTIEVLQAFVNEFHSFVIRVKPLSAREVLLEFQSADDMRVVLQEGKEFLKQKFM 144
TV I VLQ + + + + L A +VLL D+ +L E +F F
Sbjct: 71 ATVHNGEAIPVLQRRIYDAGFEHLDIITLGADKVLLRTDDDSDVLFLLSEASDFFDTFFT 130
Query: 145 VITPCTRQTRSRSSLVWLKVHRVPVYAWSYDFFDAVVCTFSRLVCLDHPTSSRARFDVAR 204
+ R W+++ VP+ A + +FF V R++ +D PT + FD AR
Sbjct: 131 KPVKWKKDMVVRERGAWVRIFGVPLQACNPEFFKLCVYDCGRMLKVDDPTLEKIHFDYAR 190
Query: 205 VLV 207
VLV
Sbjct: 191 VLV 193