Miyakogusa Predicted Gene

Lj0g3v0023769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0023769.1 Non Characterized Hit- tr|B6TYT6|B6TYT6_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,53.47,0.000000000003,seg,NULL; coiled-coil,NULL,CUFF.1329.1
         (374 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g016870.1 | transmembrane protein, putative | HC | chr6:65...   403   e-112
Medtr3g067495.1 | hypothetical protein | HC | chr3:30078302-3007...    66   4e-11

>Medtr6g016870.1 | transmembrane protein, putative | HC |
           chr6:6535959-6541359 | 20130731
          Length = 352

 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/342 (62%), Positives = 248/342 (72%), Gaps = 7/342 (2%)

Query: 1   MAGLLAWAADVVX----XXXXXXXXSIPIIWSEDQRKYVWELDQKAXXXXXXXXXXXXXX 56
           MAGLLAWAADVV             SIPI++S+ Q+ YV ELD K               
Sbjct: 1   MAGLLAWAADVVGGNGGTESATEDSSIPILFSDSQKTYVRELDSKTNSLQRSIQDLRLRL 60

Query: 57  XXXXXXQSLPHLHAHSLASNNALTLQLNSHSTTRQQAQLREVTLKEENAAFENAISNCEN 116
                 Q LPHLHAHSLASNNAL LQLNSHS+TR QAQLRE TLKEENAAFEN ISNCEN
Sbjct: 61  PPPDISQRLPHLHAHSLASNNALALQLNSHSSTRHQAQLREETLKEENAAFENTISNCEN 120

Query: 117 KIKEKLQEKDLLQRRLEEMDETEKKLRTDQDSVQQLQASQDAGKSWNSGAWEEETKTNSK 176
           KIKEK+QE +LL+ +LEEMDETEKKLR + + +Q  +AS +AG+SW S  WEEE K N K
Sbjct: 121 KIKEKIQEAELLRSKLEEMDETEKKLRAELEDMQS-RASVNAGQSWISEGWEEENKINDK 179

Query: 177 AGSDADVDVEAAKSAMLEELEQRKKDLNSMEDTVRELEKKWAVLQENAHKQPSPVQREKT 236
           AG DAD   EA K+ MLE+L+++KK+L+SMEDTV+ LEKKWA +QENA KQPSP QREKT
Sbjct: 180 AGFDADA--EALKTTMLEKLDEKKKELSSMEDTVKALEKKWAAVQENALKQPSPAQREKT 237

Query: 237 LDKQLHGLIEQLAVKQAQAEDLFSDIHLKEMELERLNGLWRRMXXXXXXXXXXXXXFGKS 296
           LDKQLHGL++QLAVKQ QAE L  +IH KEMELERLN  WR++             F + 
Sbjct: 238 LDKQLHGLLQQLAVKQTQAEGLLEEIHPKEMELERLNAQWRQLQSNNSDVNNARNRFVRG 297

Query: 297 SSDKLYGLSDYEGHQRLPYHSAGKTESQQRLMLLSCRVLLAV 338
           SSDKL+GLSDY+GHQRLPYHSAG+TESQQRLMLL    +L +
Sbjct: 298 SSDKLHGLSDYDGHQRLPYHSAGRTESQQRLMLLRSAFVLYI 339


>Medtr3g067495.1 | hypothetical protein | HC |
          chr3:30078302-30079263 | 20130731
          Length = 94

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 1  MAGLLAWAADVVXXXXXXXXX---SIPIIWSEDQRKYVWELDQKAXXXXXXXXXXXXXXX 57
          MAGLLAWA DV             SIPI++++ Q+ YV + D K                
Sbjct: 1  MAGLLAWAEDVGGNGGSESATEDSSIPILFADSQKTYVRDFDSKTNCLQRSIQDLRLRLP 60

Query: 58 XXXXXQSLPHLHAHSLASNNALTLQLNSHSTT 89
                 LPHLHA  LASNN LTLQLN+HS+T
Sbjct: 61 PHDIPHCLPHLHALFLASNNTLTLQLNAHSST 92