Miyakogusa Predicted Gene

Lj0g3v0022809.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0022809.1 Non Characterized Hit- tr|K4AJV4|K4AJV4_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,38.56,8e-17,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.1287.1
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g077710.1 | methyltransferase | HC | chr5:33161778-3316314...   127   3e-30
Medtr2g028610.1 | ATRAD3, putative | HC | chr2:10615435-10613526...    70   8e-13
Medtr2g028590.1 | ATRAD3, putative | HC | chr2:10611909-10610515...    65   2e-11
Medtr1g024005.1 | ATRAD3 | HC | chr1:7759632-7761462 | 20130731        55   3e-08
Medtr0010s0400.1 | methyltransferase domain protein, putative | ...    55   4e-08
Medtr3g071050.1 | ATRAD3 | HC | chr3:31904621-31903617 | 20130731      52   3e-07

>Medtr5g077710.1 | methyltransferase | HC | chr5:33161778-33163147 |
           20130731
          Length = 388

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 67/75 (89%)

Query: 87  EAPLPPEFLAATSAQKLPLGPNRNFDSDTVHAPAGAACTLFPDDLRRFMTYPINGSCPDD 146
           +  LPPEF A+TS QKLPLG NRNF+SDTVH PAG+ACTLFPDD+R FM+Y +NGSCPDD
Sbjct: 62  DGYLPPEFFASTSPQKLPLGFNRNFNSDTVHPPAGSACTLFPDDIRSFMSYDVNGSCPDD 121

Query: 147 ELLSQKLLLKGCDPL 161
           E+LSQ+LLLKGC+PL
Sbjct: 122 EILSQRLLLKGCEPL 136


>Medtr2g028610.1 | ATRAD3, putative | HC | chr2:10615435-10613526 |
           20130731
          Length = 459

 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%)

Query: 90  LPPEFLAATSAQKLPLGPNRNFDSDTVHAPAGAACTLFPDDLRRFMTYPINGSCPDDELL 149
           L  E   A    KLP G +    SD +H   G AC    ++L+++MTY I G CP DE+L
Sbjct: 140 LSDELSIALGPHKLPYGYSPKIGSDEIHMTIGEACLRLNEELKQYMTYDIGGECPVDEVL 199

Query: 150 SQKLLLKGCDPL 161
           SQ L+LKGC+PL
Sbjct: 200 SQGLILKGCEPL 211


>Medtr2g028590.1 | ATRAD3, putative | HC | chr2:10611909-10610515 |
           20130731
          Length = 464

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query: 88  APLPPEFLAATSAQKLPLGPNRNFDSDTVHAPAGAACTLFPDDLRRFMTYPINGSCPDDE 147
           A +  E   A    KLP   +    S  ++ P G AC    ++L+++MTY I G CP D+
Sbjct: 143 ATISDELGIALGPHKLPFEYSPKIGSGEIYMPVGEACLRLHEELKQYMTYDIGGECPVDD 202

Query: 148 LLSQKLLLKGCDPL 161
           +LSQ L+LKGC+PL
Sbjct: 203 VLSQGLILKGCEPL 216


>Medtr1g024005.1 | ATRAD3 | HC | chr1:7759632-7761462 | 20130731
          Length = 426

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query: 101 QKLPLGPNRNFDSDTVHAPAGAACTLFPDDLRRFMTYPINGSCPDDELLSQKLLLKGCDP 160
            +LPLG +       + +  G +C    D L +FM+Y  +G+CPDD  ++QKL+LKGC+P
Sbjct: 120 HQLPLGKDSRTGITEMVSSVGHSCEKSADLLSQFMSYKASGACPDDWSVAQKLILKGCEP 179

Query: 161 L 161
           L
Sbjct: 180 L 180


>Medtr0010s0400.1 | methyltransferase domain protein, putative | HC
           | scaffold0010:254488-252344 | 20130731
          Length = 460

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 111 FDSDTVHAPAGAACTLFPDDLRRFMTYPINGSCPDDELLSQKLLLKGCDPL 161
           + SD V+   G AC L   +L ++M Y I   C DD  L+QKL+L GCDPL
Sbjct: 168 YGSDKVYNTIGHACVLHKKELEQYMDYDIGSYCDDDWNLAQKLMLNGCDPL 218


>Medtr3g071050.1 | ATRAD3 | HC | chr3:31904621-31903617 | 20130731
          Length = 278

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 101 QKLPLGPNRNFDSDTVHAPAGAACTLFPDDLRRFMTYPINGSCPDDELLSQKLLLKGCDP 160
            KLPLG +       + +  G +C    D + ++M Y + G+C DD   +QKL+LKGC+P
Sbjct: 87  HKLPLGKDSKTGMTEMVSSMGYSCEKSSDLMSQYMNYKVFGNCQDDWSYAQKLILKGCEP 146

Query: 161 L 161
           L
Sbjct: 147 L 147