Miyakogusa Predicted Gene

Lj0g3v0021389.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0021389.1 Non Characterized Hit- tr|D8RIM9|D8RIM9_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,46.21,6e-17,Clathrin_lg_ch,Clathrin light chain; seg,NULL;
coiled-coil,NULL; PROTEIN BINDING / PROTEIN TRANSPORT,CUFF.1189.1
         (285 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g088980.1 | clathrin light chain-like protein | HC | chr4:...   213   2e-55
Medtr2g013220.1 | clathrin light chain-like protein | HC | chr2:...   201   5e-52
Medtr8g098515.1 | clathrin light chain-like protein | HC | chr8:...   187   9e-48

>Medtr4g088980.1 | clathrin light chain-like protein | HC |
           chr4:35592996-35589688 | 20130731
          Length = 306

 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 151/218 (69%), Gaps = 17/218 (7%)

Query: 30  DSFSNFDADSVKDSAGDDAFSSQAVP-----ETPSPPPIYS--------AGAGFAPYSPE 76
           D F+  D DS     G  ++S++ VP       P  P ++         A + F P    
Sbjct: 8   DHFAAGDDDSYSGYGGFSSYSAEDVPVDHTTAAPESPDVFGFSDQDPSYAQSPFEPVHAM 67

Query: 77  QNGEGAGGG---FVASDGPILPPPADFAPEEGFALREWRRENAIRLEEKEKKENETRLQI 133
           +NG G GG       SDGP+LPPPA+  PEEG  LREWRR+NAI+L+EKEK+E E RL+I
Sbjct: 68  ENGNGYGGHDDDVFVSDGPVLPPPAEMEPEEGNVLREWRRQNAIQLDEKEKREKEMRLKI 127

Query: 134 LEEADEYKIGFYRKREVNVENTKASNREREKLFLASGEKFHAEADKNYWKAIGELIPHEV 193
           +EEA++YK+GFY KR++NVE  K  NREREKL+LA+ E FH EADKNYWKAIGE+IP EV
Sbjct: 128 IEEAEDYKVGFYEKRKLNVETNKVQNREREKLYLANQENFHKEADKNYWKAIGEIIPREV 187

Query: 194 PAIQ-KRGKKDKEKKPSIIVIQGPKPGKPTDLSRMRQI 230
             I+ KRGKKD++K PS+ V+QGPKPGKPTDLSRMRQI
Sbjct: 188 ANIEKKRGKKDQDKNPSVTVLQGPKPGKPTDLSRMRQI 225


>Medtr2g013220.1 | clathrin light chain-like protein | HC |
           chr2:3526744-3522489 | 20130731
          Length = 313

 Score =  201 bits (512), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/242 (53%), Positives = 149/242 (61%), Gaps = 37/242 (15%)

Query: 3   SFGSSGQPFEDDGVFLGYDPRLQSQRFDSFSNFDADSVKDSAGDDAFSSQAVPETPSPPP 62
           +F +S Q    D  F GY           +SNFD D   D A  +  S          P 
Sbjct: 21  NFAASDQ----DDTFSGYG---------GYSNFDGDVTVDHAAAETTS----------PE 57

Query: 63  IYSAGAGFAPYSPE-------------QNGEGAGGGFVASDGPILPPPADFAPEEGFALR 109
           IY        YSP               NG G   G   SDGPILPPP +   EEG+ALR
Sbjct: 58  IYGFSDPNPGYSPSPFESVTVENGNDNGNGYGDDDGVFVSDGPILPPPGEMESEEGYALR 117

Query: 110 EWRRENAIRLEEKEKKENETRLQILEEADEYKIGFYRKREVNVENTKASNREREKLFLAS 169
           EWRR+NAI LEEKEK+E E RL+I+EEA+EYK+ FY KR++NVE  K  NREREKLF+A+
Sbjct: 118 EWRRQNAIELEEKEKREKEMRLKIIEEAEEYKVAFYEKRKLNVETNKVQNREREKLFVAN 177

Query: 170 GEKFHAEADKNYWKAIGELIPHEVPAIQK-RGKKDKEKKPSIIVIQGPKPGKPTDLSRMR 228
            EKFH EADK YWK I ELIP EV  I+K RGKKD++KKPSI V+QGPKPGKPTDLSRMR
Sbjct: 178 QEKFHKEADKAYWKTIAELIPREVANIEKRRGKKDQDKKPSITVVQGPKPGKPTDLSRMR 237

Query: 229 QI 230
           QI
Sbjct: 238 QI 239


>Medtr8g098515.1 | clathrin light chain-like protein | HC |
           chr8:41094060-41095751 | 20130731
          Length = 354

 Score =  187 bits (475), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 115/230 (50%), Positives = 144/230 (62%), Gaps = 15/230 (6%)

Query: 10  PFEDDGVFLGYDPRLQSQRFDSFSNFDADSVKDSAGDDAFSSQAVPETPSPPPIYSAGAG 69
           PFEDD     Y+     Q+FD  S F   +  D       +S  +      PP Y    G
Sbjct: 30  PFEDDNN-SNYEGFNSQQQFDYGSTFHPPNNPDDDHLTVDTSNNINNDQHSPPGY----G 84

Query: 70  FAPYSPEQN--------GEGAGGGFVASDGPILPPPADFAPEEGFALREWRRENAIRLEE 121
           F   SP  N              G  +S+GP+LP P     EEGFA REWRR+NAI LEE
Sbjct: 85  FGVSSPNPNPDFVTPFQTNETDDGIFSSEGPVLPDPTQMQ-EEGFARREWRRKNAIHLEE 143

Query: 122 KEKKENETRLQILEEADEYKIGFYRKREVNVENTKASNREREKLFLASGEKFHAEADKNY 181
           KEK+E E R QI++EA+++K  FY KR++N E  K +NRE+EK++LA+ EKFH EADK+Y
Sbjct: 144 KEKREKEMRNQIIKEAEDFKEAFYEKRKLNCETNKQTNREKEKIYLANQEKFHKEADKHY 203

Query: 182 WKAIGELIPHEVPAIQK-RGKKDKEKKPSIIVIQGPKPGKPTDLSRMRQI 230
           WKAI E+IP EVP I+K RGKK+ + KPS+ VIQGPKPGKPTDLSRMRQ+
Sbjct: 204 WKAIAEIIPREVPNIEKRRGKKEADNKPSVHVIQGPKPGKPTDLSRMRQM 253