Miyakogusa Predicted Gene

Lj0g3v0020899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0020899.1 tr|F2DTA3|F2DTA3_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,41.1,2e-18,DUF179,Protein
of unknown function DUF179; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,NODE_6563_length_695_cov_314.516541.path1.1
         (233 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g011850.1 | plant/MXO21-9 protein | HC | chr7:3281753-3284...   287   5e-78
Medtr3g005140.1 | electron transporter, putative | HC | chr3:786...    95   7e-20
Medtr3g005140.2 | electron transporter, putative | HC | chr3:788...    95   7e-20

>Medtr7g011850.1 | plant/MXO21-9 protein | HC | chr7:3281753-3284321
           | 20130731
          Length = 291

 Score =  287 bits (735), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 165/235 (70%), Gaps = 19/235 (8%)

Query: 1   MEACFLTHSSFIKTPDQLIPSIRAGSLAYSKSKRPSQQFQSRKVGIPFTVSCCQFSSSSG 60
           M+ACFL+HSSF K        IR GSL YSK +   QQF SRKVGIPF VSCC  SSSS 
Sbjct: 1   MDACFLSHSSFTK--------IRGGSLPYSK-RFSHQQFNSRKVGIPFHVSCCNMSSSSP 51

Query: 61  ED--KPIVNADWRSFRAKLVAGEQILKPEXXXXXXXXXXXXXXSPLITIGDKWAHIIHEP 118
            D  KP +N DWRSFRAKLVAGEQ+LKPE               PLITIGDKWAH+IHEP
Sbjct: 52  SDDEKPTLNTDWRSFRAKLVAGEQLLKPEFLSSATNPDTVVDHPPLITIGDKWAHVIHEP 111

Query: 119 ERGCLLIATEKLDGVHIFERTVILLLATGPIGPSGIILNRPSLMSIKETRSTAFDVEDTF 178
           ERGCLLIATEKLDGVHIFERTVILLL+ GPIGPSGIILNRPSLMSIKETRSTAFDV  TF
Sbjct: 112 ERGCLLIATEKLDGVHIFERTVILLLSNGPIGPSGIILNRPSLMSIKETRSTAFDVMGTF 171

Query: 179 SNSXXXXXXXXXXXXXXXSPKXXXXXXXXXXAVGKSGVFEEVMKGLYYGAKESVG 233
           SNS               SPK           VGKSGVF+EVMKGLYYG KESVG
Sbjct: 172 SNSPLYFGGPLEEGLFLVSPK--------DDVVGKSGVFDEVMKGLYYGTKESVG 218


>Medtr3g005140.1 | electron transporter, putative | HC |
           chr3:78652-81355 | 20130731
          Length = 322

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 86/181 (47%), Gaps = 18/181 (9%)

Query: 56  SSSSGEDKPIVNADWRSFRAKLVAGEQILKPEXXXXXXXXXXXXXXSPLITIGDKWAHII 115
           S+++ + +  VN DWR FRAKL   E + +                 PL T   KWAH I
Sbjct: 83  SNNNSDKRAHVNLDWREFRAKLYRDE-LKEIADADTHKEGGALHISKPLET---KWAHPI 138

Query: 116 HEPERGCLLIATEKLDGVHIFERTVILLLATGPI----GPSGIILNRPSLMSIKETRSTA 171
             PE GC+L+AT+KLDG+  FERTVILLL +G      GP GI++NRP    IK+     
Sbjct: 139 PVPETGCVLVATDKLDGIRTFERTVILLLRSGTRHPQEGPFGIVINRPLHKKIKQMNPKN 198

Query: 172 FDVEDTFSNSXXXXXXXXXXXXXXXSPKXXXXXXXXXXAVGKSGVFEEVMKGLYYGAKES 231
            D+  TFS+                 P              K   FEEV+ GLYYGA+  
Sbjct: 199 HDLVTTFSDC----------SLHFGGPLEASMFLLKSGEKLKLPGFEEVVPGLYYGARNC 248

Query: 232 V 232
           +
Sbjct: 249 L 249


>Medtr3g005140.2 | electron transporter, putative | HC |
           chr3:78869-81355 | 20130731
          Length = 322

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 86/181 (47%), Gaps = 18/181 (9%)

Query: 56  SSSSGEDKPIVNADWRSFRAKLVAGEQILKPEXXXXXXXXXXXXXXSPLITIGDKWAHII 115
           S+++ + +  VN DWR FRAKL   E + +                 PL T   KWAH I
Sbjct: 83  SNNNSDKRAHVNLDWREFRAKLYRDE-LKEIADADTHKEGGALHISKPLET---KWAHPI 138

Query: 116 HEPERGCLLIATEKLDGVHIFERTVILLLATGPI----GPSGIILNRPSLMSIKETRSTA 171
             PE GC+L+AT+KLDG+  FERTVILLL +G      GP GI++NRP    IK+     
Sbjct: 139 PVPETGCVLVATDKLDGIRTFERTVILLLRSGTRHPQEGPFGIVINRPLHKKIKQMNPKN 198

Query: 172 FDVEDTFSNSXXXXXXXXXXXXXXXSPKXXXXXXXXXXAVGKSGVFEEVMKGLYYGAKES 231
            D+  TFS+                 P              K   FEEV+ GLYYGA+  
Sbjct: 199 HDLVTTFSDC----------SLHFGGPLEASMFLLKSGEKLKLPGFEEVVPGLYYGARNC 248

Query: 232 V 232
           +
Sbjct: 249 L 249