Miyakogusa Predicted Gene

Lj0g3v0020849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0020849.1 Non Characterized Hit- tr|H3GQR2|H3GQR2_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,60.98,1e-18,DUF382,Domain of unknown function DUF382; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL,CUFF.1158.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g013350.1 | splicing factor 3B subunit 2 | HC | chr2:35769...   124   2e-29
Medtr2g013350.3 | splicing factor 3B subunit 2 | HC | chr2:35775...   123   3e-29
Medtr2g013350.2 | splicing factor 3B subunit 2 | HC | chr2:35774...   123   3e-29
Medtr4g089085.1 | splicing factor 3B subunit 2 | HC | chr4:35697...   122   1e-28

>Medtr2g013350.1 | splicing factor 3B subunit 2 | HC |
           chr2:3576901-3585046 | 20130731
          Length = 578

 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 69/82 (84%), Gaps = 6/82 (7%)

Query: 1   MQPKM---VIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPDMLSHELKEA 57
           MQPKM    IDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKP MLSH+LKEA
Sbjct: 244 MQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPGMLSHDLKEA 303

Query: 58  PGMPEGAPPNYEEPVFNTKHWG 79
            GMPEGAPP +   + N + +G
Sbjct: 304 LGMPEGAPPPW---LINMQRYG 322


>Medtr2g013350.3 | splicing factor 3B subunit 2 | HC |
           chr2:3577560-3585046 | 20130731
          Length = 501

 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 69/82 (84%), Gaps = 6/82 (7%)

Query: 1   MQPKM---VIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPDMLSHELKEA 57
           MQPKM    IDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKP MLSH+LKEA
Sbjct: 167 MQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPGMLSHDLKEA 226

Query: 58  PGMPEGAPPNYEEPVFNTKHWG 79
            GMPEGAPP +   + N + +G
Sbjct: 227 LGMPEGAPPPW---LINMQRYG 245


>Medtr2g013350.2 | splicing factor 3B subunit 2 | HC |
           chr2:3577473-3584784 | 20130731
          Length = 523

 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 69/82 (84%), Gaps = 6/82 (7%)

Query: 1   MQPKM---VIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPDMLSHELKEA 57
           MQPKM    IDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKP MLSH+LKEA
Sbjct: 189 MQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPGMLSHDLKEA 248

Query: 58  PGMPEGAPPNYEEPVFNTKHWG 79
            GMPEGAPP +   + N + +G
Sbjct: 249 LGMPEGAPPPW---LINMQRYG 267


>Medtr4g089085.1 | splicing factor 3B subunit 2 | HC |
           chr4:35697993-35706063 | 20130731
          Length = 579

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 69/82 (84%), Gaps = 6/82 (7%)

Query: 1   MQPKM---VIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPDMLSHELKEA 57
           MQPKM    IDYQVLHDAFFKYQTKPKL+SLG+LYHEGKEFEVKLREMKP MLSHELKEA
Sbjct: 255 MQPKMGKMDIDYQVLHDAFFKYQTKPKLSSLGDLYHEGKEFEVKLREMKPGMLSHELKEA 314

Query: 58  PGMPEGAPPNYEEPVFNTKHWG 79
            GMPEG+PP +   + N + +G
Sbjct: 315 LGMPEGSPPPW---LINMQRYG 333