Miyakogusa Predicted Gene

Lj0g3v0020069.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0020069.1 Non Characterized Hit- tr|F6GUK3|F6GUK3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,73.48,0,RNA-binding domain, RBD,NULL; RNA recognition motif,RNA
recognition motif domain; seg,NULL; no descr,CUFF.1192.1
         (256 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083550.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   191   7e-49
Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   172   4e-43
Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   130   2e-30
Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein...   130   2e-30
Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   121   7e-28
Medtr5g079870.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    71   1e-12
Medtr5g079870.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    71   1e-12
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    63   2e-10
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    63   2e-10
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    63   2e-10
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    63   2e-10
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    61   8e-10
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    61   8e-10
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    61   8e-10
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    61   8e-10
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr...    57   2e-08
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr...    56   3e-08
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub...    56   3e-08
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    56   4e-08
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro...    55   7e-08
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    55   9e-08
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    54   1e-07
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c...    54   1e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    53   2e-07
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    53   3e-07
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    53   3e-07
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    53   3e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    52   5e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   5e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777...    52   6e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    51   1e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   1e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub...    50   3e-06

>Medtr3g083550.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:37716900-37714302 | 20130731
          Length = 248

 Score =  191 bits (485), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 86/90 (95%), Positives = 89/90 (98%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           DLPTSLLVRNLRHDCRPEDLRRPFG FGPLKDIYLPKDYYTGQPRGFGF+QFVDPADAAD
Sbjct: 38  DLPTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAAD 97

Query: 104 AKYHMDGQILLGRELTVVFAEENRKKPTEM 133
           AKYHMDGQ+LLGRE+TVVFAEENRKKPTEM
Sbjct: 98  AKYHMDGQVLLGREITVVFAEENRKKPTEM 127


>Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:23814162-23811233 | 20130731
          Length = 220

 Score =  172 bits (435), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 84/89 (94%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           LPTSLLVRNL  DCRPEDL  PFGQFGP+KD+YLP+DYYTG+PRGFGFVQFVDPADAADA
Sbjct: 41  LPTSLLVRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADA 100

Query: 105 KYHMDGQILLGRELTVVFAEENRKKPTEM 133
           KYHMDGQ+LLGRELTVVFAEENRKKP EM
Sbjct: 101 KYHMDGQVLLGRELTVVFAEENRKKPQEM 129


>Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:34159814-34164480 | 20130731
          Length = 286

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLVRN+  DCRPE+LR PF +FGP++D+Y+PKDYY+GQPRGF FVQFVD  +A++A+YH
Sbjct: 48  SLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQYH 107

Query: 108 MDGQILLGRELTVVFAEENRKKPTEM 133
           MD QI  GRE++VV A E RK+P EM
Sbjct: 108 MDRQIFAGREISVVVAAETRKRPEEM 133


>Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:34159851-34164480 | 20130731
          Length = 249

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLVRN+  DCRPE+LR PF +FGP++D+Y+PKDYY+GQPRGF FVQFVD  +A++A+YH
Sbjct: 48  SLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQYH 107

Query: 108 MDGQILLGRELTVVFAEENRKKPTEM 133
           MD QI  GRE++VV A E RK+P EM
Sbjct: 108 MDRQIFAGREISVVVAAETRKRPEEM 133


>Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:49138254-49142925 | 20130731
          Length = 314

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 71/89 (79%)

Query: 45  LPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADA 104
           LP+ LLVRNL  D RPEDLR PF ++GP+KD+YLP++YYTG+PRGFGFV++    DAA+A
Sbjct: 46  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEA 105

Query: 105 KYHMDGQILLGRELTVVFAEENRKKPTEM 133
           K  ++  I+ GRE+ +VFAEENRK P EM
Sbjct: 106 KQQLNHTIIGGREIRIVFAEENRKTPQEM 134


>Medtr5g079870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:34159814-34164480 | 20130731
          Length = 210

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 38/48 (79%)

Query: 86  QPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEM 133
           QPRGF FVQFVD  +A++A+YHMD QI  GRE++VV A E RK+P EM
Sbjct: 10  QPRGFAFVQFVDAYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEM 57


>Medtr5g079870.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:34159851-34164480 | 20130731
          Length = 210

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 38/48 (79%)

Query: 86  QPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEM 133
           QPRGF FVQFVD  +A++A+YHMD QI  GRE++VV A E RK+P EM
Sbjct: 10  QPRGFAFVQFVDAYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEM 57


>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:37499515-37504601 | 20130731
          Length = 280

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + DI++PKD  TG+ RGF FV++    +A+ A   
Sbjct: 17  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRMVDGREITVQFAK 93


>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:37499504-37504601 | 20130731
          Length = 280

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + DI++PKD  TG+ RGF FV++    +A+ A   
Sbjct: 17  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRMVDGREITVQFAK 93


>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:37499531-37504526 | 20130731
          Length = 281

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + DI++PKD  TG+ RGF FV++    +A+ A   
Sbjct: 17  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRMVDGREITVQFAK 93


>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:37499531-37504601 | 20130731
          Length = 281

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + DI++PKD  TG+ RGF FV++    +A+ A   
Sbjct: 17  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRMVDGREITVQFAK 93


>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:29846071-29843364 | 20130731
          Length = 267

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + DI++P+D  TG+ RGF FV++    +A+ A   
Sbjct: 17  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRMVDGREITVQFAK 93


>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:29846071-29843364 | 20130731
          Length = 267

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + DI++P+D  TG+ RGF FV++    +A+ A   
Sbjct: 17  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRMVDGREITVQFAK 93


>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:29846071-29843364 | 20130731
          Length = 267

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + DI++P+D  TG+ RGF FV++    +A+ A   
Sbjct: 17  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRMVDGREITVQFAK 93


>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:29846071-29843364 | 20130731
          Length = 267

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           SLLV N+      +DL   F ++G + DI++P+D  TG+ RGF FV++    +A+ A   
Sbjct: 17  SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76

Query: 108 MDGQILLGRELTVVFAE 124
           +DG+++ GRE+TV FA+
Sbjct: 77  LDGRMVDGREITVQFAK 93


>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
           chr7:38601352-38612085 | 20130731
          Length = 709

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T LLVRN+  +   +DLR+ F  FG +K + LP  +  G  RGF FV++V   +A +A  
Sbjct: 586 TKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKF--GNHRGFAFVEYVTQQEAQNALT 643

Query: 107 HMDGQILLGRELTVVFAEE 125
            +    L GR L +  A+E
Sbjct: 644 ALSSTHLYGRHLVIERAKE 662


>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
           chr7:38600263-38612243 | 20130731
          Length = 723

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T LLVRN+  +   +DLR+ F  FG +K + LP  +  G  RGF FV++V   +A +A  
Sbjct: 600 TKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKF--GNHRGFAFVEYVTQQEAQNALT 657

Query: 107 HMDGQILLGRELTVVFAEE 125
            +    L GR L +  A+E
Sbjct: 658 ALSSTHLYGRHLVIERAKE 676


>Medtr8g031560.1 | eukaryotic translation initiation factor 3
           subunit G | HC | chr8:11851079-11853472 | 20130731
          Length = 280

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           S+ V NL  D R  DL   FG FG +  +Y+  D  TG  RGFGFV FV+  DA  A   
Sbjct: 200 SVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINK 259

Query: 108 MDG 110
           ++G
Sbjct: 260 LNG 262


>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           LC | chr4:26418780-26419998 | 20130731
          Length = 164

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 38/77 (49%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           D+     V  L      E L + F Q+G + D  +  D  TG+ RGFGFV F D     D
Sbjct: 5   DVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRD 64

Query: 104 AKYHMDGQILLGRELTV 120
           A   M+GQ + GR +TV
Sbjct: 65  AIEGMNGQDMDGRNITV 81


>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
           protein | HC | chr5:19719748-19722666 | 20130731
          Length = 170

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 41/77 (53%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
            +L V  L  +     L   F  FG +KD+  P D  T + R FGFV F++  DA+ A  
Sbjct: 10  NTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69

Query: 107 HMDGQILLGRELTVVFA 123
           +MDG  L GR LTV +A
Sbjct: 70  NMDGAELYGRVLTVNYA 86


>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           LC | chr4:26374538-26375597 | 20130731
          Length = 128

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 38/77 (49%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           D+     V  L      E L + F Q+G + D  +  D  TG+ RGFGFV F +     D
Sbjct: 3   DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62

Query: 104 AKYHMDGQILLGRELTV 120
           A   M+GQ L GR +TV
Sbjct: 63  AIEAMNGQDLDGRNITV 79


>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           LC | chr4:26374412-26375716 | 20130731
          Length = 161

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 38/77 (49%)

Query: 44  DLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAAD 103
           D+     V  L      E L + F Q+G + D  +  D  TG+ RGFGFV F +     D
Sbjct: 3   DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62

Query: 104 AKYHMDGQILLGRELTV 120
           A   M+GQ L GR +TV
Sbjct: 63  AIEAMNGQDLDGRNITV 79


>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
           chr1:43879642-43873268 | 20130731
          Length = 572

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%)

Query: 48  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYH 107
           ++ V N+ +D   E L+    + GP+    L  D  TG+P+G+GF ++ D   A  A+ +
Sbjct: 30  TVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRN 89

Query: 108 MDGQILLGRELTVVFAEENR 127
           + G  + GR+L V FAE ++
Sbjct: 90  LQGYEINGRQLRVDFAENDK 109


>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr3:36253866-36255120 | 20130731
          Length = 135

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
           L V  L      + L+  F  FG + ++ +  D  +G+ RGFGFV F +   A  AK  M
Sbjct: 38  LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97

Query: 109 DGQILLGRELTVVFAEE 125
           DG+ LLGR L + FA E
Sbjct: 98  DGKALLGRPLRINFALE 114


>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:42749843-42753184 | 20130731
          Length = 493

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADA---ADAK 105
           L +  +  D   E LR  F  +G +K+  + KD  TG+ RGFGFV F+DPA A      K
Sbjct: 8   LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67

Query: 106 YHMDGQIL 113
           +++DG+++
Sbjct: 68  HNIDGRMV 75


>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:42749843-42754792 | 20130731
          Length = 479

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADA---ADAK 105
           L +  +  D   E LR  F  +G +K+  + KD  TG+ RGFGFV F+DPA A      K
Sbjct: 8   LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67

Query: 106 YHMDGQIL 113
           +++DG+++
Sbjct: 68  HNIDGRMV 75


>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:45527069-45523373 | 20130731
          Length = 268

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%)

Query: 46  PTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAK 105
            T L +  + +      LR  F ++G + D  +  D  TG+ RGFGF+ F    +A+ A 
Sbjct: 41  TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100

Query: 106 YHMDGQILLGRELTVVFAEE 125
             +DGQ L GR + V +A E
Sbjct: 101 QALDGQDLHGRRVRVNYANE 120


>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:31628430-31625444 | 20130731
          Length = 144

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T+L V  L      E LR  F +FG +    +  D  +G  +GFGFV++    DAA    
Sbjct: 51  TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110

Query: 107 HMDGQILLGRELTVVFAEENRKKP 130
            MDG+ L G    V+FAE  R +P
Sbjct: 111 GMDGKFLEG---WVIFAEYARPRP 131


>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:23466507-23467712 | 20130731
          Length = 112

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%)

Query: 46  PTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAK 105
            T L +  L ++     LR  F Q G + ++ +  ++ TG+ +G+GFV+F     AA A+
Sbjct: 32  STKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATAR 91

Query: 106 YHMDGQILLGRELTVVFAEE 125
             + GQI+ GR + V +A +
Sbjct: 92  KELHGQIVDGRRIRVGYAHK 111


>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
           chr7:37775862-37750453 | 20130731
          Length = 1678

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 46  PTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAK 105
           P  L VRNL +    E+L   F QFG +  ++L  D  T + +G  F+ F  P  AA A 
Sbjct: 898 PCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARAL 957

Query: 106 YHMDGQILLGRELTVVFA-------EENRKK 129
              D  I  GR L V+ A       EEN+ +
Sbjct: 958 EESDNSIFQGRLLHVIAAIPIHSNNEENKNQ 988


>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:37745112-37734961 | 20130731
          Length = 865

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
           T LLV+N+  +   +DLR+ F  FG +K + LP  +  G  RGF FV++V   +A +A  
Sbjct: 742 TKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKF--GNHRGFAFVEYVTQQEAQNALT 799

Query: 107 HMDGQILLGRELTVVFAEE 125
            +    L GR L +  A+E
Sbjct: 800 ALSSTHLYGRHLVIERAKE 818


>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:45527062-45523373 | 20130731
          Length = 276

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 49  LLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHM 108
           L V  + +      LR  F ++G + D  +  D  TG+ RGFGF+ F    +A+ A   +
Sbjct: 52  LSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 111

Query: 109 DGQILLGRELTVVFAEE 125
           DGQ L GR + V +A E
Sbjct: 112 DGQDLHGRRVRVNYANE 128


>Medtr8g107310.1 | eukaryotic translation initiation factor 3
           subunit G | HC | chr8:45339610-45341085 | 20130731
          Length = 292

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 33/64 (51%)

Query: 47  TSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKY 106
            S+ V NL  D R  DL   F  FG +  +Y+  D  TG  RGFGFV FV   DA  A  
Sbjct: 211 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAIN 270

Query: 107 HMDG 110
            ++G
Sbjct: 271 KLNG 274