Miyakogusa Predicted Gene

Lj0g3v0019949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0019949.1 Non Characterized Hit- tr|D8U9J1|D8U9J1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,37.9,1e-18,TAFII55_N,TAFII55 protein, conserved region;
TRANSCRIPTION INITIATION FACTOR TFIID 55 KD
SUBUNIT-REL,NODE_21185_length_1088_cov_106.576286.path1.1
         (127 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083880.1 | transcription initiation factor TFIID subunit-...   214   1e-56

>Medtr3g083880.1 | transcription initiation factor TFIID
           subunit-like protein | HC | chr3:37848884-37849993 |
           20130731
          Length = 200

 Score =  214 bits (545), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/124 (91%), Positives = 118/124 (95%)

Query: 1   MEEQFILRVPPNVAERIERLLNENNPSSSEDKSLDLSFNEDGRSGTFAIEDEHFPASLLD 60
           MEEQFILRVPPNVAERIERLLNENN SSSEDKSLDL F++DGRSGTF I DEHFPASLLD
Sbjct: 1   MEEQFILRVPPNVAERIERLLNENNASSSEDKSLDLQFSDDGRSGTFVIGDEHFPASLLD 60

Query: 61  LPCVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRRFRRE 120
           LP VVESYKTYDDNSL+K+ADIGQMIMVRESGDAAPD IEYRHGLTPPMRDARKRRFRRE
Sbjct: 61  LPAVVESYKTYDDNSLVKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRRE 120

Query: 121 PDLN 124
           PDLN
Sbjct: 121 PDLN 124