Miyakogusa Predicted Gene

Lj0g3v0018509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0018509.1 Non Characterized Hit- tr|K3XFY2|K3XFY2_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si000801,36.6,1e-18,seg,NULL,CUFF.1073.1
         (219 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g463770.1 | Smr (small MutS-related) domain protein | HC |...   117   9e-27
Medtr2g013430.1 | protein silencing defective protein | HC | chr...    51   9e-07

>Medtr3g463770.1 | Smr (small MutS-related) domain protein | HC |
           chr3:25561469-25569460 | 20130731
          Length = 527

 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 61/72 (84%)

Query: 142 STVLGKEYVRRNATRNKGFRNGFVEKEDAEQFLCSMLGDDCDLNLAVVRDVLCQCGYDIE 201
           ST+LG EYVRRN  R K F N  V  E+AEQFL SMLG+DCDLNLAVVRDVLCQCGYD+E
Sbjct: 152 STILGNEYVRRNGGRKKKFGNEVVGNEEAEQFLYSMLGNDCDLNLAVVRDVLCQCGYDVE 211

Query: 202 KAMDVLLDLSAS 213
           KAMDVLLDL+A+
Sbjct: 212 KAMDVLLDLAAN 223



 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 38/47 (80%)

Query: 30 EEEETKRIVLEALVEAFSLSSIDEAAMAYTVAGGDPGKASEILRRGL 76
          +++ETK  VL +LVEAFSLSS++EA MAY VA GD  KASEIL RGL
Sbjct: 30 QQQETKNKVLASLVEAFSLSSMEEAVMAYDVAKGDVNKASEILSRGL 76


>Medtr2g013430.1 | protein silencing defective protein | HC |
           chr2:3610551-3616427 | 20130731
          Length = 487

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 167 KEDAEQFLCSMLGDDCDLNLAVVRDVLCQCGYDIEKAMDVLLDLSASTSDQ 217
           +ED E+FL  MLG    L+  ++R+VL  CGYD++K++D LLD S   SD+
Sbjct: 160 QEDMEEFLFKMLGVGFKLDRKMIREVLDMCGYDLQKSLDTLLDQSVMDSDK 210