Miyakogusa Predicted Gene
- Lj0g3v0018339.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0018339.1 Non Characterized Hit- tr|J3LF66|J3LF66_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G3,34.62,0.000000000000007,seg,NULL; DUF1771,Domain of unknown
function DUF1771; Smr,Smr protein/MutS2 C-terminal; SMR,Smr
prot,CUFF.1060.1
(164 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g463770.1 | Smr (small MutS-related) domain protein | HC |... 263 6e-71
Medtr2g013430.1 | protein silencing defective protein | HC | chr... 61 5e-10
Medtr2g013430.2 | protein silencing defective protein | HC | chr... 61 6e-10
Medtr1g014880.6 | Smr (small MutS-related) domain protein | HC |... 49 2e-06
Medtr1g014880.1 | Smr (small MutS-related) domain protein | HC |... 49 2e-06
Medtr7g081260.2 | Smr (small MutS-related) domain protein | HC |... 49 2e-06
Medtr7g081260.3 | Smr (small MutS-related) domain protein | HC |... 49 2e-06
Medtr7g081260.1 | Smr (small MutS-related) domain protein | HC |... 49 2e-06
>Medtr3g463770.1 | Smr (small MutS-related) domain protein | HC |
chr3:25561469-25569460 | 20130731
Length = 527
Score = 263 bits (672), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 122/150 (81%), Positives = 134/150 (89%)
Query: 2 NWRNVAKKLQSLGPGFDVCPNVAESQKRTYPKGDEYLVCREDAKQHWGSMKSYYQKAATA 61
+WRN+AKK+QSLGPGFD PNVAE Q+R KG+EY R+DA+Q W S+K Y+QKAATA
Sbjct: 329 DWRNIAKKMQSLGPGFDGRPNVAEPQQRPRTKGEEYHAFRQDARQQWDSVKGYFQKAATA 388
Query: 62 FTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAMR 121
+T GDR YAAYLSDQGKEQTK+AQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAMR
Sbjct: 389 YTNGDRGYAAYLSDQGKEQTKIAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAMR 448
Query: 122 MLKLHLLFGSYVPSVQTLRVITGCGSHGVG 151
MLKLHLLFGSYVPSVQ +RVITGCGSHG G
Sbjct: 449 MLKLHLLFGSYVPSVQMIRVITGCGSHGFG 478
>Medtr2g013430.1 | protein silencing defective protein | HC |
chr2:3610551-3616427 | 20130731
Length = 487
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 36 EYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDI 95
+Y R+ K++ +MK YY+ A AF GD+A A L DQG+ A++AD + S I
Sbjct: 328 DYQSARKAVKEYRVTMKEYYKAAVDAFANGDQAKAEKLLDQGQFYLNKAREADDECSKMI 387
Query: 96 FVARNKDIENVITIDLHGQHVKPAMRMLKLHLLFGSYVPSVQTLRVI 142
+ ++ + ++ +DL K A+R+LK HL S + S + L+VI
Sbjct: 388 LETKAEETQEMV-LDLRDHEPKVAIRLLKTHLSSLSGISSFEYLKVI 433
>Medtr2g013430.2 | protein silencing defective protein | HC |
chr2:3610551-3616410 | 20130731
Length = 494
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 36 EYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDI 95
+Y R+ K++ +MK YY+ A AF GD+A A L DQG+ A++AD + S I
Sbjct: 335 DYQSARKAVKEYRVTMKEYYKAAVDAFANGDQAKAEKLLDQGQFYLNKAREADDECSKMI 394
Query: 96 FVARNKDIENVITIDLHGQHVKPAMRMLKLHLLFGSYVPSVQTLRVI 142
+ ++ + ++ +DL K A+R+LK HL S + S + L+VI
Sbjct: 395 LETKAEETQEMV-LDLRDHEPKVAIRLLKTHLSSLSGISSFEYLKVI 440
>Medtr1g014880.6 | Smr (small MutS-related) domain protein | HC |
chr1:3600828-3594680 | 20130731
Length = 577
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 37 YLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIF 96
Y RE+A+ H +Y+++A A+ G++A A LS +G+ ++A KA I+
Sbjct: 416 YSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKEAHGKAQESIY 475
Query: 97 VARNKDIENVIT-------IDLHGQHVKPAMRMLK--LHLLFGSYVPSVQTLRV--ITGC 145
RN ++ IDLHG HV A+ +LK L +L + + Q L+V G
Sbjct: 476 RQRNPVGPEMVNGRGHERMIDLHGLHVSEAIHVLKHELGVLRSTARAAEQRLQVYICVGT 535
Query: 146 GSHGVG 151
G H G
Sbjct: 536 GHHTRG 541
>Medtr1g014880.1 | Smr (small MutS-related) domain protein | HC |
chr1:3600859-3594741 | 20130731
Length = 602
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 37 YLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTKASHDIF 96
Y RE+A+ H +Y+++A A+ G++A A LS +G+ ++A KA I+
Sbjct: 441 YSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKEAHGKAQESIY 500
Query: 97 VARNKDIENVIT-------IDLHGQHVKPAMRMLK--LHLLFGSYVPSVQTLRV--ITGC 145
RN ++ IDLHG HV A+ +LK L +L + + Q L+V G
Sbjct: 501 RQRNPVGPEMVNGRGHERMIDLHGLHVSEAIHVLKHELGVLRSTARAAEQRLQVYICVGT 560
Query: 146 GSHGVG 151
G H G
Sbjct: 561 GHHTRG 566
>Medtr7g081260.2 | Smr (small MutS-related) domain protein | HC |
chr7:31002174-31007409 | 20130731
Length = 420
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 31 YPKGDEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTK 90
+ + D YL R+DA + S + + AA AF +G+ A S + +E+ A K +++
Sbjct: 225 WEEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSE 284
Query: 91 ASHDIFVARNKDIENVITIDLHGQHVKPAMRMLKLHL 127
A+ I RN D ++ +DLHG H A++ L+ HL
Sbjct: 285 AATKILSIRNSD-NDISRLDLHGLHAAEAVQALQEHL 320
>Medtr7g081260.3 | Smr (small MutS-related) domain protein | HC |
chr7:31002088-31007756 | 20130731
Length = 432
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 31 YPKGDEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTK 90
+ + D YL R+DA + S + + AA AF +G+ A S + +E+ A K +++
Sbjct: 237 WEEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSE 296
Query: 91 ASHDIFVARNKDIENVITIDLHGQHVKPAMRMLKLHL 127
A+ I RN D ++ +DLHG H A++ L+ HL
Sbjct: 297 AATKILSIRNSD-NDISRLDLHGLHAAEAVQALQEHL 332
>Medtr7g081260.1 | Smr (small MutS-related) domain protein | HC |
chr7:31002174-31007616 | 20130731
Length = 432
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 31 YPKGDEYLVCREDAKQHWGSMKSYYQKAATAFTRGDRAYAAYLSDQGKEQTKLAQKADTK 90
+ + D YL R+DA + S + + AA AF +G+ A S + +E+ A K +++
Sbjct: 237 WEEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSE 296
Query: 91 ASHDIFVARNKDIENVITIDLHGQHVKPAMRMLKLHL 127
A+ I RN D ++ +DLHG H A++ L+ HL
Sbjct: 297 AATKILSIRNSD-NDISRLDLHGLHAAEAVQALQEHL 332