Miyakogusa Predicted Gene

Lj0g3v0016679.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0016679.1 Non Characterized Hit- tr|C0PP28|C0PP28_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,87.18,0.000000000004,coiled-coil,NULL; seg,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL,gene.g1432.t1.1
         (365 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g471180.1 | kinesin-like protein for actin based movement ...   599   e-171

>Medtr8g471180.1 | kinesin-like protein for actin based movement
            protein | HC | chr8:28778502-28794714 | 20130731
          Length = 1297

 Score =  599 bits (1545), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/391 (79%), Positives = 322/391 (82%), Gaps = 33/391 (8%)

Query: 4    SAVTKKLEEELKKRDALIERLHEENEKLFDRLTEKKSVAGSPKLSSPSP------RESVN 57
            + V KKLEEELKKRDALIERLHEENEKLFDRLTEK SVAGSPK++   P      RESVN
Sbjct: 623  TVVAKKLEEELKKRDALIERLHEENEKLFDRLTEKTSVAGSPKVAPSFPPSSPLSRESVN 682

Query: 58   AQPRDMGRNGTSNT-TSQSMNVLPSPL---ATDKNDGTVALVKSDSEIVKTTPAGEYLTA 113
             QP++M RNGTSN  T+ SM+ L SPL   A  KNDGTVALVKS SEIVKTTPAGEYLT 
Sbjct: 683  IQPQNMKRNGTSNNPTANSMHALSSPLTAAAAAKNDGTVALVKSGSEIVKTTPAGEYLTT 742

Query: 114  ALNDFDPDQHEGHAAISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFSFIKKMEPK 173
            ALNDFDPDQ+EGHAAISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFSFI+KMEPK
Sbjct: 743  ALNDFDPDQYEGHAAISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFSFIRKMEPK 802

Query: 174  RVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEKXXXXXXXXXXXXXXXXXXXV 233
            RVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEK                   V
Sbjct: 803  RVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEKTNTGRSRSSSRGNSPGRSPV 862

Query: 234  QYVDEQIQGFK-----------------------DIWRQQVTGGKLREITEEAKSFAIGN 270
            QYVDEQIQGFK                       +IWRQQVTGGKLREITEEAKSFAIGN
Sbjct: 863  QYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDQEIWRQQVTGGKLREITEEAKSFAIGN 922

Query: 271  KALAALFVHTPAGELQRQIRSWLAENFDFLSVSGNDASEGSTGQLELLSTAIMDGWMAGL 330
            KALAALFVHTPAGELQRQIRSWLAE+FDFLSVSGNDAS GSTGQLELLSTAIMDGWMAGL
Sbjct: 923  KALAALFVHTPAGELQRQIRSWLAESFDFLSVSGNDASGGSTGQLELLSTAIMDGWMAGL 982

Query: 331  GAALPPHTDALGQLLFEYSKRVYTSQLQHLK 361
            GAALPPHTDALGQLLFEYSKRVYTSQLQHLK
Sbjct: 983  GAALPPHTDALGQLLFEYSKRVYTSQLQHLK 1013