Miyakogusa Predicted Gene

Lj0g3v0013779.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0013779.1 Non Characterized Hit- tr|I3S6Y1|I3S6Y1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,100,0.000000000000009,no
description,NULL,NODE_41960_length_159_cov_729.698120.path2.1
         (41 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g053520.1 | small ubiquitin-like modifier 3 | HC | chr3:21...    69   1e-12
Medtr3g053540.1 | small ubiquitin-like modifier 3 | HC | chr3:21...    67   5e-12

>Medtr3g053520.1 | small ubiquitin-like modifier 3 | HC |
          chr3:21271713-21269094 | 20130731
          Length = 101

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 35/41 (85%), Gaps = 1/41 (2%)

Query: 1  MSSGGGVTNNEEDKKPTDQGGAHINLKVKGQDGNEVFFRIK 41
          MSSG    NNEEDKKP + GGAHINLKVKGQDGNEVFFRIK
Sbjct: 1  MSSGAAAPNNEEDKKP-EAGGAHINLKVKGQDGNEVFFRIK 40


>Medtr3g053540.1 | small ubiquitin-like modifier 3 | HC |
          chr3:21293436-21291225 | 20130731
          Length = 101

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 1  MSSGGGVTNNEEDKKPTDQGGAHINLKVKGQDGNEVFFRIK 41
          MSSG    N EEDKKP + GGAHINLKVKGQDGNEVFFRIK
Sbjct: 1  MSSGAAAPNTEEDKKP-EAGGAHINLKVKGQDGNEVFFRIK 40