Miyakogusa Predicted Gene

Lj0g3v0012939.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0012939.3 tr|Q0JHE8|Q0JHE8_ORYSJ Os01g0867800 protein
OS=Oryza sativa subsp. japonica GN=Os01g0867800 PE=2
SV=,57.89,2e-18,RRM_5,NULL; seg,NULL; HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN,NULL; RRM,RNA recognition motif domain,CUFF.702.3
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g098530.2 | polypyrimidine tract-binding-like protein | HC...   150   5e-37
Medtr1g098530.1 | polypyrimidine tract-binding-like protein | HC...   150   5e-37
Medtr6g043520.1 | polypyrimidine tract-binding-like protein | HC...   143   5e-35
Medtr6g043520.2 | polypyrimidine tract-binding-like protein | HC...   143   5e-35
Medtr6g043520.3 | polypyrimidine tract-binding-like protein | HC...   143   5e-35
Medtr6g037550.1 | polypyrimidine tract-binding-like protein | HC...   114   4e-26

>Medtr1g098530.2 | polypyrimidine tract-binding-like protein | HC
          | chr1:44364881-44358462 | 20130731
          Length = 443

 Score =  150 bits (378), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 75/83 (90%)

Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
           S+NDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSAVSAL FY N QPSIRGRNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVSALHFYGNTQPSIRGRNVYVQ 76

Query: 75 FSSHQELTTMDQTQAREDEAFRL 97
          FSSHQELTT+DQ+Q R DE  R+
Sbjct: 77 FSSHQELTTIDQSQGRGDEPNRI 99


>Medtr1g098530.1 | polypyrimidine tract-binding-like protein | HC
          | chr1:44365128-44358462 | 20130731
          Length = 443

 Score =  150 bits (378), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 75/83 (90%)

Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
           S+NDLLQLFQPFGVITKLVMLRAKNQAL+QMQDVPSAVSAL FY N QPSIRGRNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVSALHFYGNTQPSIRGRNVYVQ 76

Query: 75 FSSHQELTTMDQTQAREDEAFRL 97
          FSSHQELTT+DQ+Q R DE  R+
Sbjct: 77 FSSHQELTTIDQSQGRGDEPNRI 99


>Medtr6g043520.1 | polypyrimidine tract-binding-like protein | HC
          | chr6:13313766-13323536 | 20130731
          Length = 443

 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
           S+NDLLQLFQPFGV+TKLVMLRAKNQAL+QMQDV SA SA+QFY N QPSIRGRNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVVTKLVMLRAKNQALVQMQDVASADSAIQFYINSQPSIRGRNVYVQ 76

Query: 75 FSSHQELTTMDQTQAREDEAFRL 97
          FSSH+ELTTMDQ Q REDE  R+
Sbjct: 77 FSSHRELTTMDQNQGREDEPNRI 99


>Medtr6g043520.2 | polypyrimidine tract-binding-like protein | HC
          | chr6:13313738-13323576 | 20130731
          Length = 443

 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
           S+NDLLQLFQPFGV+TKLVMLRAKNQAL+QMQDV SA SA+QFY N QPSIRGRNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVVTKLVMLRAKNQALVQMQDVASADSAIQFYINSQPSIRGRNVYVQ 76

Query: 75 FSSHQELTTMDQTQAREDEAFRL 97
          FSSH+ELTTMDQ Q REDE  R+
Sbjct: 77 FSSHRELTTMDQNQGREDEPNRI 99


>Medtr6g043520.3 | polypyrimidine tract-binding-like protein | HC
          | chr6:13313766-13323536 | 20130731
          Length = 443

 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 15 FSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANVQPSIRGRNVYVQ 74
           S+NDLLQLFQPFGV+TKLVMLRAKNQAL+QMQDV SA SA+QFY N QPSIRGRNVYVQ
Sbjct: 17 ISENDLLQLFQPFGVVTKLVMLRAKNQALVQMQDVASADSAIQFYINSQPSIRGRNVYVQ 76

Query: 75 FSSHQELTTMDQTQAREDEAFRL 97
          FSSH+ELTTMDQ Q REDE  R+
Sbjct: 77 FSSHRELTTMDQNQGREDEPNRI 99


>Medtr6g037550.1 | polypyrimidine tract-binding-like protein | HC
          | chr6:13376655-13370075 | 20130731
          Length = 336

 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 9/95 (9%)

Query: 3  LHSLSARPSLALFSQNDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAVSALQFYANV 62
          +H  +  P +A   +NDLL LFQPFGVITKL++LRAKNQ      ++PSA+ A++FYAN 
Sbjct: 8  IHVRNVGPEIA---ENDLLLLFQPFGVITKLMVLRAKNQ------NIPSAIRAVEFYANA 58

Query: 63 QPSIRGRNVYVQFSSHQELTTMDQTQAREDEAFRL 97
          QPSIRGRN+YVQFSSH+ +T+ +Q+Q REDE  R+
Sbjct: 59 QPSIRGRNLYVQFSSHRVITSANQSQGREDEPNRI 93