Miyakogusa Predicted Gene
- Lj0g3v0012389.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0012389.1 CUFF.648.1
(534 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g096940.1 | Pre-mRNA-splicing factor SLU7-like protein | H... 875 0.0
Medtr1g085510.1 | Pre-mRNA-splicing factor SLU7-like protein | H... 497 e-140
Medtr1g076120.1 | Pre-mRNA-splicing factor SLU7-like protein | L... 177 2e-44
>Medtr7g096940.1 | Pre-mRNA-splicing factor SLU7-like protein | HC |
chr7:38920000-38925767 | 20130731
Length = 533
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/532 (80%), Positives = 444/532 (83%)
Query: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP
Sbjct: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
Query: 61 SLKHQRKWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKW 120
SLKHQRKWKSDPNYT SWYDRGAKTFQA K+RKGACENCGAMTH+AK+CMERPRK GAK
Sbjct: 61 SLKHQRKWKSDPNYTTSWYDRGAKTFQAQKYRKGACENCGAMTHNAKACMERPRKVGAKH 120
Query: 121 TNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDEARXXXXXXXXXXXXX 180
T+KHIA DEKVETFELDYDGKRDRWNGYDASTYARVIERYEARD+AR
Sbjct: 121 TDKHIAADEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDDARKKFLKEQQLKRLE 180
Query: 181 XSDQNGEGSASXXXXXXXXLRVDEAKVDESKQMDFAKVEKRVRXXXXXXXXXVRNLRIRE 240
DQN EG+A LRVDEAKVDESKQMDFAKVEKRVR VRNLRIRE
Sbjct: 181 KGDQNDEGAAIDEAEDEDDLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIRE 240
Query: 241 DTAKYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNIHA 300
DTAKYLLNL+VNSAHYDPKTRSMREDPLP+ADPNEKFYLGDNQYR+SGQALEFK+LNIHA
Sbjct: 241 DTAKYLLNLDVNSAHYDPKTRSMREDPLPEADPNEKFYLGDNQYRSSGQALEFKDLNIHA 300
Query: 301 WEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPRELLL 360
WEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTI+EKYGNAADEDKLPRELLL
Sbjct: 301 WEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTIIEKYGNAADEDKLPRELLL 360
Query: 361 GQSEGQVEYDRAGRIIKGQEAAVPRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQTIR 420
GQSE QVEYDRAGRI+KGQE A+PRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQTIR
Sbjct: 361 GQSERQVEYDRAGRIVKGQEVAIPRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQTIR 420
Query: 421 NSYCTXXXXXXXXXXXNDLMRANIARKEAAAEDAKPMEEKRLATWGTDVPXXXXXXXXXX 480
NSYCT DLMRANIARKE+AAED KP+EEKR ATWGTDVP
Sbjct: 421 NSYCTGAAGIEAAEAAGDLMRANIARKESAAEDPKPIEEKRPATWGTDVPDDVVLDEKLL 480
Query: 481 XXXXXXXXXXXXXXXXXXXXXYNVRWNDEVTAEDMEAYRMKKVHSDDPMKDF 532
YNVRWND+VT EDMEAYRMKKVH DDPMK+F
Sbjct: 481 ADALKKEDQRKREEKDERKRKYNVRWNDQVTQEDMEAYRMKKVHHDDPMKNF 532
>Medtr1g085510.1 | Pre-mRNA-splicing factor SLU7-like protein | HC |
chr1:38191492-38187117 | 20130731
Length = 387
Score = 497 bits (1279), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/389 (67%), Positives = 288/389 (74%), Gaps = 18/389 (4%)
Query: 7 AFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQR 66
F+SREDH+KQI+LEEA K+GLAPAE DEDGKEINPHIP+++SS P LKHQR
Sbjct: 14 TFRSREDHQKQIQLEEACKSGLAPAEFDEDGKEINPHIPRFISSPPC--------LKHQR 65
Query: 67 KWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKWTNKHIA 126
K S PN T S R KTFQA K+RKGACENCGAMTH AK CMER RK +K IA
Sbjct: 66 KRISHPNNTSSRSSRVTKTFQASKYRKGACENCGAMTHVAKECMERARK-----VDKSIA 120
Query: 127 PDEKVETFEL---DYDGKRDRWNGYDASTYARVIERYEARDEARXXXXXXXXXXXXXXSD 183
DEK ETFE DY+ KRDRW G+D STYARV++ YEARD AR D
Sbjct: 121 ADEKKETFETAERDYERKRDRWEGFDVSTYARVVKVYEARDHARMKYLKEQKLKKLEKGD 180
Query: 184 QNGEGSASXXXXXXXXLRVDEAKVDESKQMDFAKVEKRVRXXXXXXXXXVRNLRIREDTA 243
QN EG+A LR+DEAKVDE KQMDFAKVEKRVR VRNLRIREDTA
Sbjct: 181 QNDEGAA--IDESEDDLRLDEAKVDEMKQMDFAKVEKRVRTTGGGSRGTVRNLRIREDTA 238
Query: 244 KYLLNLEVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEFKELNIHAWEA 303
KYLLNL+VNSAHYDPKTRSMREDPLP++DPNEKFYLGDN YRNSGQALE KELN +A EA
Sbjct: 239 KYLLNLDVNSAHYDPKTRSMREDPLPESDPNEKFYLGDNHYRNSGQALEVKELNNNAREA 298
Query: 304 FDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTILEKYGNAADEDKLPRELLLGQS 363
FDKGQDVHM A PSQ ELL+KNFKVMKEK SQ K TI+EKY A +D LPRELLLGQS
Sbjct: 299 FDKGQDVHMLAGPSQVELLHKNFKVMKEKSMSQWKKTIIEKYNYVALKDPLPRELLLGQS 358
Query: 364 EGQVEYDRAGRIIKGQEAAVPRSKYEEDV 392
E Q+ YDRAGRIIKG+EA PRSK EED+
Sbjct: 359 ERQILYDRAGRIIKGEEALFPRSKDEEDI 387
>Medtr1g076120.1 | Pre-mRNA-splicing factor SLU7-like protein | LC |
chr1:33719947-33716705 | 20130731
Length = 188
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 94/107 (87%)
Query: 61 SLKHQRKWKSDPNYTKSWYDRGAKTFQADKFRKGACENCGAMTHDAKSCMERPRKAGAKW 120
SLKHQRKWK D +YTKSW+ +GAK FQADK+RKGA E CGA+TH+AKSCMERP++ GA+W
Sbjct: 11 SLKHQRKWKLDQSYTKSWHHKGAKVFQADKYRKGAYEKCGALTHNAKSCMERPQRIGARW 70
Query: 121 TNKHIAPDEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDEAR 167
T+KH+APDEK+ETFELDYDG DR NGY+ +TYA VIER EARDEAR
Sbjct: 71 TSKHVAPDEKIETFELDYDGNLDRSNGYNTATYANVIERCEARDEAR 117