Miyakogusa Predicted Gene

Lj0g3v0012039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0012039.1 tr|B9H4T7|B9H4T7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_558531 PE=4 SV=1,41.67,0.00001,
,CUFF.611.1
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g087150.1 | plant/T5J17-70 protein, putative | HC | chr3:3...   265   2e-71

>Medtr3g087150.1 | plant/T5J17-70 protein, putative | HC |
           chr3:39521058-39525188 | 20130731
          Length = 250

 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/172 (74%), Positives = 145/172 (84%), Gaps = 6/172 (3%)

Query: 1   MLPEGDESANCALPLAFLSILEVPNQAKSSMCLDDQINCQNCIDVQMESSDVYSQCVIDI 60
           M+P+  E+A  A PLAFLS++EVPNQAKS +CLD  INCQN ID QM   D+Y+QC++DI
Sbjct: 76  MVPKEGENARSASPLAFLSVVEVPNQAKSGVCLDTHINCQNSIDFQMNRKDIYAQCIVDI 135

Query: 61  PSVNGNPVSPESFEEGVESFKTGNSPTSVLWRESSLKVGAKLMQSLSNLSNQREPSKLTD 120
           P+VNGN VSPES+++GVESFKTGNSP SVLWRESSLK GAKLMQSL NL + R      D
Sbjct: 136 PNVNGNSVSPESYDDGVESFKTGNSPKSVLWRESSLKAGAKLMQSLVNLGSPR------D 189

Query: 121 KPVTEKVHDMPINKWRRYKRSASFDSRKVALLFSILSSLGTLVLIYLTLRVR 172
           KPVTEK+HD+P NKWRRYKRS SFDSRKVALLFSILSSLGTLVLIYLTLRVR
Sbjct: 190 KPVTEKLHDLPSNKWRRYKRSTSFDSRKVALLFSILSSLGTLVLIYLTLRVR 241