Miyakogusa Predicted Gene

Lj0g3v0008779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0008779.1 tr|B9HHY4|B9HHY4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564111 PE=4
SV=1,31.17,0.000000000002,DUF565,Uncharacterised protein family Ycf20;
seg,NULL,CUFF.511.1
         (181 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g025400.1 | ycf20-like protein | HC | chr4:8599913-8595683...   213   8e-56
Medtr4g025390.1 | ycf20-like protein | HC | chr4:8586332-8585427...   145   3e-35
Medtr4g093535.1 | antigen receptor-like protein | HC | chr4:3715...    65   3e-11

>Medtr4g025400.1 | ycf20-like protein | HC | chr4:8599913-8595683 |
           20130731
          Length = 186

 Score =  213 bits (542), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 124/155 (80%), Gaps = 3/155 (1%)

Query: 8   MLSNYMTCARAISIDQISSRASKVGLSAFFYKTTFGQKQCAPCFSVIFAQPCLMINLRKM 67
           MLSN MT A+ I +D ISSR S+VGL+AFFYKT FGQK  +PCFS  FAQPCL++  ++ 
Sbjct: 1   MLSNCMTSAKFICLDYISSRVSEVGLAAFFYKTAFGQK-LSPCFSFHFAQPCLVVGFKRT 59

Query: 68  TWSVRXXXXXXXXXXXXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGF 127
           TWSVR              GTNGRTRII+VIQEF+T LGSK+++VKKNLPMKLLFFL GF
Sbjct: 60  TWSVRSSIDDSSFSPSN--GTNGRTRIIRVIQEFQTTLGSKIEKVKKNLPMKLLFFLIGF 117

Query: 128 YCATAFSTVIGQTGDWDILSAALAVFVVEGIGALI 162
           YCATAFSTVIGQTGDWDILSAALAV VVEGIGAL+
Sbjct: 118 YCATAFSTVIGQTGDWDILSAALAVVVVEGIGALM 152


>Medtr4g025390.1 | ycf20-like protein | HC | chr4:8586332-8585427 |
           20130731
          Length = 128

 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 78/96 (81%), Gaps = 2/96 (2%)

Query: 67  MTWSVRXXXXXXXXXXXXXXGTNGRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAG 126
           MTWSVR              GTNGRTRII+VIQEFRT LGSK+++VKKNLPMKLLFFL G
Sbjct: 1   MTWSVRSSINDSSFSPSN--GTNGRTRIIRVIQEFRTTLGSKIEKVKKNLPMKLLFFLVG 58

Query: 127 FYCATAFSTVIGQTGDWDILSAALAVFVVEGIGALI 162
           FYCATAFSTVIGQTGDWDILSAALAV V EGIGAL+
Sbjct: 59  FYCATAFSTVIGQTGDWDILSAALAVVVAEGIGALM 94


>Medtr4g093535.1 | antigen receptor-like protein | HC |
           chr4:37153633-37155590 | 20130731
          Length = 201

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 47/77 (61%)

Query: 90  GRTRIIKVIQEFRTKLGSKVQEVKKNLPMKLLFFLAGFYCATAFSTVIGQTGDWDILSAA 149
           G TR+ +++     +L  K+   +KN P K+   L GFY A A +T++GQTGDWD+L A 
Sbjct: 90  GGTRLGRILSAGGRQLLDKLNSARKNFPTKVFLLLLGFYTANALATILGQTGDWDVLVAG 149

Query: 150 LAVFVVEGIGALINPFP 166
           + V  +EGIG LI   P
Sbjct: 150 VVVAAIEGIGMLIYKKP 166