Miyakogusa Predicted Gene

Lj0g3v0007899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0007899.1 Non Characterized Hit- tr|K4D356|K4D356_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,36.61,6e-18,seg,NULL,CUFF.444.1
         (185 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054990.1 | hypothetical protein | HC | chr1:24174417-2417...   133   1e-31
Medtr7g106820.1 | hypothetical protein | HC | chr7:43509208-4350...    94   1e-19

>Medtr1g054990.1 | hypothetical protein | HC |
           chr1:24174417-24175921 | 20130731
          Length = 187

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 114/166 (68%), Gaps = 7/166 (4%)

Query: 1   MSKKVVLRPTVSSTHRRQPLLRQSKSSGRAVTQLGEXXXXXXXXXXXXPFGLANLMYLAI 60
           MS KVVLR  V S++RRQPLL+Q+KSS +A T+LGE            P  +AN++YLAI
Sbjct: 1   MSSKVVLRQ-VQSSNRRQPLLQQNKSSLKAGTRLGEAVGGTAAVCCCAPCAVANIVYLAI 59

Query: 61  YKVPASLCQRALKKTKQRRRRHHLPTAGEEVVFPQTRRCTCACCDDF-SARVYPACGSLD 119
           YKVPA+LC RAL+K KQ  RR    +A  E +FP  RRCTC CCDD   ARV+P C   D
Sbjct: 60  YKVPATLCIRALRKRKQHHRRRIQASA--ETMFPAKRRCTCGCCDDIVGARVHPTCSDDD 117

Query: 120 DVAGMMGS---GLEEKEDNKELMELEKEMWDRFYSTGFWRSPSQRD 162
           +    + S   G++E+E++K+++ELEKEMW+ FY TGFWRS SQR+
Sbjct: 118 ETYRGVKSDSLGVQEEEEDKDVVELEKEMWNTFYETGFWRSSSQRN 163


>Medtr7g106820.1 | hypothetical protein | HC |
           chr7:43509208-43507788 | 20130731
          Length = 183

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 92/163 (56%), Gaps = 15/163 (9%)

Query: 1   MSKKVVLRPTVSSTHRRQPLLR-QSKSSGRAVTQL-GEXXXXXXXXXXXXPFGLANLMYL 58
           MS K+VLR T S T RRQPLL  QS   G AV ++ G             P GLA+ + L
Sbjct: 1   MSNKIVLRQTASITRRRQPLLEIQSSKKGCAVGEVVGGTAAECVAVCCCCPCGLAHFLLL 60

Query: 59  AIYKVPASLCQRALKKTKQRRRRHHLPTAGEEVVFPQTRRCTCACCD----DFSARVYPA 114
           A+YK+PA LC++ L+K ++RR         + ++ P+ R C C CCD    +   RV P 
Sbjct: 61  AVYKIPAGLCRKMLRKRRRRR------VIKDGLLQPKRRNCYCGCCDINYVNGVIRVSPM 114

Query: 115 CGSLDDVAGMMGSGLEEKEDNKELMELEKEMWDRFYSTGFWRS 157
           C  ++D +  +   LE   ++ + + LEKEMW+RFYS GFWRS
Sbjct: 115 C--VNDGSSDIKR-LEYSSEDDDAIALEKEMWERFYSAGFWRS 154