Miyakogusa Predicted Gene

Lj0g3v0007879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0007879.1 Non Characterized Hit- tr|I1JGF0|I1JGF0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.14604
PE,72.61,0,RPAP2_Rtr1,Protein of unknown function DUF408; SUBFAMILY
NOT NAMED,NULL; UNCHARACTERIZED,NULL; ZF_RT,CUFF.479.1
         (706 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g055080.1 | RNA polymerase II subunit B1 CTD phosphatase R...   944   0.0  

>Medtr1g055080.1 | RNA polymerase II subunit B1 CTD phosphatase
           RPAP2, putative | HC | chr1:24256181-24260253 | 20130731
          Length = 702

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/707 (68%), Positives = 541/707 (76%), Gaps = 6/707 (0%)

Query: 1   MAKNQHVFVKDAVFKLQMSLLEGIRSEDQLFAAGSLISRSDYEDVVTERSITNVCGYPLC 60
           M KNQ VFVKDAV KLQ++LL+GI+ EDQLFAAGSLIS+SDYEDVVTERSITN+CGYPLC
Sbjct: 1   MEKNQPVFVKDAVLKLQLALLDGIQKEDQLFAAGSLISKSDYEDVVTERSITNLCGYPLC 60

Query: 61  RNGLPSDRPRKGRYRISLKEHKVYDQHETYMFCSSTCVVNSKAFAGTLQGERCPTVDPEK 120
           RN LP+DRPRKGRYRISLKEHKVYD  ETYMFCSS CV+NSKAFAG+LQ ERC  +D EK
Sbjct: 61  RNALPTDRPRKGRYRISLKEHKVYDLQETYMFCSSGCVINSKAFAGSLQDERCQVLDVEK 120

Query: 121 LNDVLRLFENLNAEPVEXXXXXXXXXXXXXRIQEKTESSTGEVSLEQWLGPSNAIEGYVP 180
           LN+VLRLF NLN EP+E             +IQ+KTE+ TGE SLEQW GPSNAIEGYVP
Sbjct: 121 LNNVLRLFGNLNLEPMENFGKDGELGFSDLKIQDKTETGTGEESLEQWAGPSNAIEGYVP 180

Query: 181 XXXXXXXXXXXXNIKKGSKASRGRLNDDKKLIYSEMDFMSTIITQDEYSVSKVSSGQTDT 240
                       N KKGSKA+RG+ +D K LI SE+DFMSTIITQDEYSVSKVSSGQTDT
Sbjct: 181 KQRDNGSKASKKNDKKGSKANRGKSDDYKSLIGSELDFMSTIITQDEYSVSKVSSGQTDT 240

Query: 241 TADHQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIK 300
           T DHQI                                                   V+K
Sbjct: 241 TGDHQIKPPSILEKPKRVGNKVVRKDDNIQDISSSFESTVNISTSTKEKEIANSCKDVLK 300

Query: 301 SSLNPSVEKIAVHSSTMSEI-LDVEQNISERKSIQLQGETSRVAANQNAFTSSLDPVNVE 359
           SS +PSVEK  VHS T+SE   D EQN SERKSIQL+ ETS VAAN +A TS+L+P NVE
Sbjct: 301 SSHDPSVEKKVVHSITISERECDAEQNNSERKSIQLKEETSIVAANDDASTSNLNPTNVE 360

Query: 360 GEFQIEKETGSYKTRPKSSLKSTGKNKLSRSVTWADEKTNSSGSKDLCSVREFGDGDIKK 419
            +F  EK   S  T+PKSSLKS GK KLSRSVTWADEK N SG KDLC+V+EFG+  I K
Sbjct: 361 EKFINEKAIESCHTKPKSSLKSNGKKKLSRSVTWADEKINGSGGKDLCAVKEFGN--INK 418

Query: 420 ESDLEGNIDVTDDDEDIVRRASAEACAIALSQASEAVASGDSDITDAVSEAGIIILPSSH 479
           ESD+  N+D + DDED++R A AEACAIALSQASEAVASGDSD  DAVSEAGI ILP   
Sbjct: 419 ESDVADNVD-SADDEDMLRCALAEACAIALSQASEAVASGDSDPNDAVSEAGITILPHPP 477

Query: 480 DVVEEGTMEDVDIPETDAVTLKWPRKPGISDFDLFDSEDSWYDPPPEGFSLTLSPFASMW 539
           + VE  T++D DI ET++VTLKWP+KP  S+FDLFDSED+W+D PPEGFSLTLSPFA+MW
Sbjct: 478 NAVEGSTVDDDDILETNSVTLKWPKKP--SEFDLFDSEDTWFDAPPEGFSLTLSPFATMW 535

Query: 540 NALFSWTTSSSLAYIYGRDVSFHEDFLSVNGREYPCKIILTDGRSSEIKQALASCLARAL 599
           NA FSW TSSSLAYIYGRDVSFHE+FLSVNGREYP KI+LTDGRSSEIKQAL  CLARAL
Sbjct: 536 NAFFSWITSSSLAYIYGRDVSFHEEFLSVNGREYPSKIVLTDGRSSEIKQALVGCLARAL 595

Query: 600 PAVVAELRLPIPVSTLEQGVVCLLDTMSFVDALPAFRMKQWQVVVLLFIDALSVCRIPAL 659
           PAVV ELRLPIPV  LEQ +V LLDTMSFVDALPAFRMKQWQVVVLLF+DALSV R+P L
Sbjct: 596 PAVVEELRLPIPVDILEQAMVRLLDTMSFVDALPAFRMKQWQVVVLLFVDALSVSRVPTL 655

Query: 660 ISYMMDRRDLFHKVLNGSQLGMEEYEVLKDLIIPLGKAPHFSSQRGA 706
           ISYM DRRDLF KVL+GSQ+G EEY+VLKD I+PLG+APHFSSQ GA
Sbjct: 656 ISYMTDRRDLFLKVLSGSQIGKEEYDVLKDFIVPLGRAPHFSSQSGA 702