Miyakogusa Predicted Gene

Lj0g3v0006349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0006349.1 tr|B9P5L7|B9P5L7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_590322 PE=4
SV=1,34.11,0.00000001, ,CUFF.380.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089660.1 | sieve element occlusion protein | HC | chr8:37...    61   2e-10
Medtr3g075450.1 | sieve element occlusion protein | HC | chr3:34...    55   2e-08

>Medtr8g089660.1 | sieve element occlusion protein | HC |
           chr8:37311495-37308195 | 20130731
          Length = 704

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 64/131 (48%), Gaps = 32/131 (24%)

Query: 16  IRVESMWNSKFKRRKQWTMTRDQ----------------GWAVASQGTTVQEGQHRAIEA 59
           +R+ESMW+SK ++ K  T+  DQ                GWAV SQGT V+  Q +  ++
Sbjct: 576 VRLESMWHSKLQQSK--TVENDQIMLEIMRILSFDSSDLGWAVLSQGT-VRMTQGKG-DS 631

Query: 60  HLLCALMNMTSGRIRLEIKGFCKEWLIYKQELQTPYHCNRLILSGVNVVI---------- 109
            L C L  +   +  +  KG       Y Q +Q P+HCNRLIL GV+  I          
Sbjct: 632 FLKC-LDELDEWKGDVNDKGVLTAMDDYIQGIQQPHHCNRLILPGVDGTIPDKIVCAECG 690

Query: 110 -QMENFFMYRC 119
             ME F+MYRC
Sbjct: 691 QPMEKFYMYRC 701


>Medtr3g075450.1 | sieve element occlusion protein | HC |
           chr3:34350060-34346003 | 20130731
          Length = 706

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 37/153 (24%)

Query: 1   MFTIFNSQKTA--FPCLI-------RVESMWNSKFKRRK--------QWTMT------RD 37
           M T FN++K +  FP +        R+ESM  SK +  +           MT       D
Sbjct: 554 MITTFNNKKFSYFFPNVTSIWFFWARLESMLYSKLQHGRTVENDKIMSEVMTVLSFDGSD 613

Query: 38  QGWAVASQGTTVQEGQHRAIEAHLLCALMNMTSGRIRLEIKGFCKEWLIYKQELQTPYHC 97
           +GWA+  +G +      RA     L +L +    + R+E  G+      Y +E+Q P+HC
Sbjct: 614 RGWAIFCRGPSEMA---RAKGDTALTSLRDFDKWKHRIEQDGWVPALNDYIKEIQQPHHC 670

Query: 98  NRLILSGVNVVI-----------QMENFFMYRC 119
           NRLIL G    I           QME +FMYRC
Sbjct: 671 NRLILPGSTGGIPQKVVCAECGRQMEKYFMYRC 703