Miyakogusa Predicted Gene

Lj0g3v0005939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0005939.1 Non Characterized Hit- tr|I1NLF8|I1NLF8_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,51.75,7e-18,seg,NULL,CUFF.355.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g096840.1 | hypothetical protein | HC | chr7:38869702-3886...   195   2e-50

>Medtr7g096840.1 | hypothetical protein | HC |
           chr7:38869702-38868668 | 20130731
          Length = 179

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 116/155 (74%), Gaps = 4/155 (2%)

Query: 1   MGKMFDKKKKLAHGHGPPKEDSNMLEQQMDIRSIMKDVQNFSYSHMAWKERKKIENNKVV 60
           MGKM+  KKK AHG GPP+E +N  E +MDIR IM+DVQNFS SHM WKERKK+E+ KVV
Sbjct: 1   MGKMY--KKKQAHGRGPPREQNNKQENEMDIRKIMEDVQNFSNSHMTWKERKKVEDRKVV 58

Query: 61  SLGGKPPKNQRLPLSVARPXXXXXXXXXXXXXXXNMILGRFGGKLGG-SNKKSVGKHKPE 119
           SLGGKP KNQRLPLSVARP                MILGRFGGK GG S+KK  GKHKPE
Sbjct: 59  SLGGKPLKNQRLPLSVARPMMKKQKQREEKMLQERMILGRFGGKDGGSSSKKPAGKHKPE 118

Query: 120 NRGLKASEGRFRNGILDVKHLLNSAGPSKNHDTSR 154
           +RGLK SEGRFRNGILDVKHLL S  P++ HDT +
Sbjct: 119 DRGLKLSEGRFRNGILDVKHLLKST-PTRGHDTGK 152