Miyakogusa Predicted Gene

Lj0g3v0005849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0005849.1 Non Characterized Hit- tr|I0ZAF2|I0ZAF2_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,48.89,0.0000000000001,seg,NULL,CUFF.331.1
         (268 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g437110.1 | crossover junction endodeoxyribonuclease, puta...   347   6e-96
Medtr3g437110.2 | crossover junction endodeoxyribonuclease, puta...   192   3e-49

>Medtr3g437110.1 | crossover junction endodeoxyribonuclease,
           putative | HC | chr3:12526435-12518817 | 20130731
          Length = 275

 Score =  347 bits (891), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 187/282 (66%), Positives = 215/282 (76%), Gaps = 30/282 (10%)

Query: 1   MESL--QFKPEFPQNQLHFMXXXXXXXXXXXXXTTISFIHIRAFCASSSSPIQTKVRRK- 57
           MESL  QF PEF   Q HFM              TISF   R+FC+SS S  Q + + + 
Sbjct: 1   MESLKIQFTPEFHLTQTHFMNKLSSKLK-----PTISF---RSFCSSSLSQTQAQTQTQN 52

Query: 58  -------------VKASESDAQLKENWLASLSY------PNRLNEEQDLTRKNDASEWIL 98
                        V +S SDAQLKENWLAS+SY       + L+E+Q+LT K +  +W L
Sbjct: 53  PEIIVPVRRKRRVVSSSSSDAQLKENWLASISYSSPANSTHFLSEDQNLTPKIEGCKWFL 112

Query: 99  GIDPDVSGAVALLKTHDSVCSPQVFDSPHVQILVGKRTRRRLDAKSVVELVRSFDAPLGT 158
           GIDPDVSGAVALLK HDSVCS QVFDSPHVQ+LVGKRTRRRL+A S+V+L+RSFDAP GT
Sbjct: 113 GIDPDVSGAVALLKMHDSVCSAQVFDSPHVQLLVGKRTRRRLNANSIVQLIRSFDAPAGT 172

Query: 159 TAYIEQSLPFPQDGKQGWWSGGFGYGLWIGILVASGFSVVPVPSFTWKAKFELSGSRISK 218
            AYIEQS+PFPQDGKQGWWSGGFGYGLWIGILV+SGF+VVPVPSFTWKAKFELSGS+ +K
Sbjct: 173 IAYIEQSIPFPQDGKQGWWSGGFGYGLWIGILVSSGFTVVPVPSFTWKAKFELSGSKNAK 232

Query: 219 DDSRRVAATLFPSVSSLLLRKKDHGRAEALLIAAYGKDQKKN 260
           DDSR++A+TLFPS+SSLL RKKDHGRAEALLIAAYGKDQ K+
Sbjct: 233 DDSRKLASTLFPSLSSLLTRKKDHGRAEALLIAAYGKDQNKS 274


>Medtr3g437110.2 | crossover junction endodeoxyribonuclease,
           putative | HC | chr3:12526359-12522105 | 20130731
          Length = 197

 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/196 (57%), Positives = 132/196 (67%), Gaps = 30/196 (15%)

Query: 1   MESL--QFKPEFPQNQLHFMXXXXXXXXXXXXXTTISFIHIRAFCASSSSPIQTKVRRK- 57
           MESL  QF PEF   Q HFM              TISF   R+FC+SS S  Q + + + 
Sbjct: 1   MESLKIQFTPEFHLTQTHFMNKLSSKLK-----PTISF---RSFCSSSLSQTQAQTQTQN 52

Query: 58  -------------VKASESDAQLKENWLASLSY------PNRLNEEQDLTRKNDASEWIL 98
                        V +S SDAQLKENWLAS+SY       + L+E+Q+LT K +  +W L
Sbjct: 53  PEIIVPVRRKRRVVSSSSSDAQLKENWLASISYSSPANSTHFLSEDQNLTPKIEGCKWFL 112

Query: 99  GIDPDVSGAVALLKTHDSVCSPQVFDSPHVQILVGKRTRRRLDAKSVVELVRSFDAPLGT 158
           GIDPDVSGAVALLK HDSVCS QVFDSPHVQ+LVGKRTRRRL+A S+V+L+RSFDAP GT
Sbjct: 113 GIDPDVSGAVALLKMHDSVCSAQVFDSPHVQLLVGKRTRRRLNANSIVQLIRSFDAPAGT 172

Query: 159 TAYIEQSLPFPQDGKQ 174
            AYIEQS+PFPQDGKQ
Sbjct: 173 IAYIEQSIPFPQDGKQ 188