Miyakogusa Predicted Gene

Lj0g3v0004639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0004639.1 Non Characterized Hit- tr|I1HGE5|I1HGE5_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,75,0.012,no
description,Nucleotide-binding, alpha-beta plait; zf-CCCH,Zinc finger,
CCCH-type; RRM_5,NULL; zin,CUFF.294.1
         (318 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g084715.2 | splicing factor U2af small subunit A-like prot...   368   e-102
Medtr2g084715.1 | splicing factor U2af small subunit A-like prot...   368   e-102
Medtr2g084715.3 | splicing factor U2af small subunit A-like prot...   368   e-102
Medtr1g035130.6 | splicing factor U2af small subunit A-like prot...   313   2e-85
Medtr1g035130.3 | splicing factor U2af small subunit A-like prot...   313   2e-85
Medtr1g035130.1 | splicing factor U2af small subunit A-like prot...   313   2e-85
Medtr1g035130.4 | splicing factor U2af small subunit A-like prot...   313   2e-85
Medtr1g035130.2 | splicing factor U2af small subunit A-like prot...   313   2e-85
Medtr1g035130.5 | splicing factor U2af small subunit A-like prot...   313   2e-85
Medtr7g103630.1 | splicing factor U2af small subunit A-like prot...   300   2e-81
Medtr2g005450.1 | zinc finger CCCH domain protein, putative | HC...   110   2e-24

>Medtr2g084715.2 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927010-35930737 | 20130731
          Length = 324

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/187 (92%), Positives = 175/187 (93%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDVHGQPIDPR+IQDH            SKYGDIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDVHGQPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HAGNAV+NLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL
Sbjct: 121 HAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 181 RRQLFGK 187
           RRQLFGK
Sbjct: 181 RRQLFGK 187



 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 257 DPSEERRARIEQWNREREEQGSASKANTEQTNNGDSGHMQNSSTY 301
           D SEERRARIEQWNREREE+  ASK NTE+T+NG +GH QN+  Y
Sbjct: 266 DGSEERRARIEQWNREREEKEPASKVNTEETSNGHNGHSQNACAY 310


>Medtr2g084715.1 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35929938 | 20130731
          Length = 324

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/187 (92%), Positives = 175/187 (93%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDVHGQPIDPR+IQDH            SKYGDIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDVHGQPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HAGNAV+NLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL
Sbjct: 121 HAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 181 RRQLFGK 187
           RRQLFGK
Sbjct: 181 RRQLFGK 187



 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 257 DPSEERRARIEQWNREREEQGSASKANTEQTNNGDSGHMQNSSTY 301
           D SEERRARIEQWNREREE+  ASK NTE+T+NG +GH QN+  Y
Sbjct: 266 DGSEERRARIEQWNREREEKEPASKVNTEETSNGHNGHSQNACAY 310


>Medtr2g084715.3 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35930729 | 20130731
          Length = 324

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/187 (92%), Positives = 175/187 (93%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVDVHGQPIDPR+IQDH            SKYGDIESLNVCDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDVHGQPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HAGNAV+NLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL
Sbjct: 121 HAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 181 RRQLFGK 187
           RRQLFGK
Sbjct: 181 RRQLFGK 187



 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 257 DPSEERRARIEQWNREREEQGSASKANTEQTNNGDSGHMQNSSTY 301
           D SEERRARIEQWNREREE+  ASK NTE+T+NG +GH QN+  Y
Sbjct: 266 DGSEERRARIEQWNREREEKEPASKVNTEETSNGHNGHSQNACAY 310


>Medtr1g035130.6 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 161/185 (87%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPD+ITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD +GQPIDPR+IQ H            SK+G +E+LNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HA  A+ +L GRFY GRPI+ DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRQLF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.3 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 161/185 (87%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPD+ITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD +GQPIDPR+IQ H            SK+G +E+LNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HA  A+ +L GRFY GRPI+ DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRQLF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.1 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643125-12639099 | 20130731
          Length = 279

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 161/185 (87%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPD+ITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD +GQPIDPR+IQ H            SK+G +E+LNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HA  A+ +L GRFY GRPI+ DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRQLF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.4 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639099 | 20130731
          Length = 279

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 161/185 (87%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPD+ITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD +GQPIDPR+IQ H            SK+G +E+LNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HA  A+ +L GRFY GRPI+ DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRQLF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.2 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639591 | 20130731
          Length = 279

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 161/185 (87%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPD+ITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD +GQPIDPR+IQ H            SK+G +E+LNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HA  A+ +L GRFY GRPI+ DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRQLF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr1g035130.5 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12641860 | 20130731
          Length = 279

 Score =  313 bits (801), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 161/185 (87%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPT+LLSNMYQRPD+ITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITP 60

Query: 61  GVDVHGQPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120
           GVD +GQPIDPR+IQ H            SK+G +E+LNVCDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 HAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180
           HA  A+ +L GRFY GRPI+ DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+I REL
Sbjct: 121 HAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGREL 180

Query: 181 RRQLF 185
           RR+LF
Sbjct: 181 RRKLF 185


>Medtr7g103630.1 | splicing factor U2af small subunit A-like protein
           | HC | chr7:41947426-41950345 | 20130731
          Length = 327

 Score =  300 bits (767), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 140/201 (69%), Positives = 162/201 (80%), Gaps = 14/201 (6%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPT++LSNMYQRPDM   
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60

Query: 61  GVDVHG--------------QPIDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLAD 106
            ++                 + +DP ++Q+H            SKYG I+SLN+CDNLAD
Sbjct: 61  FINPTPNQPQQPQPPQPPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLAD 120

Query: 107 HMVGNVYVQFREEEHAGNAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGG 166
           HMVGNVYVQ++EE+HA NA+ NLTGRFY+GRPIIVDFSPVTDFREATCRQYEEN CNRGG
Sbjct: 121 HMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGG 180

Query: 167 YCNFMHLKRISRELRRQLFGK 187
           YCNFMHLK+ISR+LR++LFG+
Sbjct: 181 YCNFMHLKKISRDLRKRLFGR 201


>Medtr2g005450.1 | zinc finger CCCH domain protein, putative | HC |
           chr2:162220-168024 | 20130731
          Length = 827

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITPGVDVHGQP 68
           FGTE D+ +CPF+ K  ACR GDRCSR+H  P  S T+L+ NMY  P +     +  G  
Sbjct: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDE--GLE 241

Query: 69  IDPRRIQDHXXXXXXXXXXXXSKYGDIESLNVCDNLADHMVGNVYVQFREEEHAGNAVRN 128
                ++               K+G+I +  VC N + H+ GNVYVQ++  + A  A  +
Sbjct: 242 YTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNS 301

Query: 129 LTGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMH 172
           + GR++AG+ +   F  +T ++ A C +Y ++   TC+ G  CNF+H
Sbjct: 302 VNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIH 348