Miyakogusa Predicted Gene
- Lj0g3v0004279.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0004279.1 tr|G7LCG1|G7LCG1_MEDTR ATP-dependent RNA helicase
A-like protein OS=Medicago truncatula
GN=MTR_8g106,45.76,2e-19,Double-stranded RNA binding
motif,Double-stranded RNA-binding; DS_RBD,Double-stranded RNA-binding;
n,CUFF.273.1
(141 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g044260.1 | ATP-dependent RNA helicase DHX36-like protein ... 261 2e-70
Medtr1g109170.2 | ATP-dependent RNA helicase DHX36-like protein ... 107 3e-24
Medtr1g109170.1 | ATP-dependent RNA helicase DHX36-like protein ... 106 8e-24
Medtr8g106630.1 | ATP-dependent RNA helicase DHX36-like protein ... 99 9e-22
Medtr8g106630.3 | ATP-dependent RNA helicase DHX36-like protein ... 99 9e-22
Medtr8g106630.5 | ATP-dependent RNA helicase DHX36-like protein ... 99 9e-22
Medtr8g106630.2 | ATP-dependent RNA helicase DHX36-like protein ... 99 9e-22
Medtr8g106630.4 | ATP-dependent RNA helicase DHX36-like protein ... 99 9e-22
Medtr8g045110.1 | ATP-dependent RNA helicase A-like protein | HC... 74 5e-14
>Medtr8g044260.1 | ATP-dependent RNA helicase DHX36-like protein | HC
| chr8:16995201-16976389 | 20130731
Length = 1148
Score = 261 bits (666), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/131 (94%), Positives = 127/131 (96%)
Query: 1 MLAVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPNY 60
MLAVQELVSGDQCEGRFVFGR SRKP+ASNDENKFTKDGTNPKSLLQTLLMRAGHS P Y
Sbjct: 1007 MLAVQELVSGDQCEGRFVFGRDSRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSAPKY 1066
Query: 61 KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQHEDDKSPP 120
KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAA+EALAWLTHTS+NAQ EDDKSPP
Sbjct: 1067 KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNAQPEDDKSPP 1126
Query: 121 DVTDNMLKLLG 131
DVTDNMLKLLG
Sbjct: 1127 DVTDNMLKLLG 1137
>Medtr1g109170.2 | ATP-dependent RNA helicase DHX36-like protein | HC
| chr1:49342716-49360401 | 20130731
Length = 1222
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 76/126 (60%), Gaps = 10/126 (7%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPR-----ASNDENKFTKD-----GTNPKSLLQTLLMR 52
AV+ L+S D CEGRFVFGR KP A + + + G N KS LQTLL R
Sbjct: 1086 AVRFLISHDSCEGRFVFGRQVLKPSNISVMAPHPASLVPRTESGPGGDNSKSQLQTLLTR 1145
Query: 53 AGHSPPNYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWLTHTSENAQ 112
AG++ P YKTK LK N+FRA VEF G++ +G+P NK+ AE+DAA EAL WL +
Sbjct: 1146 AGYAAPVYKTKQLKNNQFRATVEFNGVEIMGQPCSNKKSAEKDAAAEALQWLMGKQAGCE 1205
Query: 113 HEDDKS 118
+ D S
Sbjct: 1206 YIDHMS 1211
>Medtr1g109170.1 | ATP-dependent RNA helicase DHX36-like protein | HC
| chr1:49342716-49360105 | 20130731
Length = 1248
Score = 106 bits (264), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 72/112 (64%), Gaps = 10/112 (8%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPR-----ASNDENKFTKD-----GTNPKSLLQTLLMR 52
AV+ L+S D CEGRFVFGR KP A + + + G N KS LQTLL R
Sbjct: 1086 AVRFLISHDSCEGRFVFGRQVLKPSNISVMAPHPASLVPRTESGPGGDNSKSQLQTLLTR 1145
Query: 53 AGHSPPNYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWL 104
AG++ P YKTK LK N+FRA VEF G++ +G+P NK+ AE+DAA EAL WL
Sbjct: 1146 AGYAAPVYKTKQLKNNQFRATVEFNGVEIMGQPCSNKKSAEKDAAAEALQWL 1197
>Medtr8g106630.1 | ATP-dependent RNA helicase DHX36-like protein | HC
| chr8:44998383-45010085 | 20130731
Length = 1172
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGT---NPKSLLQTLLMRAGHSPPN 59
AV+ LVS D C+GRFV+G P+ + + DG N K+ LQT L RAGH P
Sbjct: 1033 AVRLLVSEDNCDGRFVYGHQVL-PQLKKETKSKSGDGAGGDNSKNQLQTFLSRAGHQLPT 1091
Query: 60 YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWL----THTSENAQH 113
YKT+ L+ N+FR+ V F G+ FVG+P +K+LAE+ AA EA+ WL TH+S + H
Sbjct: 1092 YKTQELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDNTHSSGDIDH 1149
>Medtr8g106630.3 | ATP-dependent RNA helicase DHX36-like protein | HC
| chr8:44998383-45010085 | 20130731
Length = 1172
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGT---NPKSLLQTLLMRAGHSPPN 59
AV+ LVS D C+GRFV+G P+ + + DG N K+ LQT L RAGH P
Sbjct: 1033 AVRLLVSEDNCDGRFVYGHQVL-PQLKKETKSKSGDGAGGDNSKNQLQTFLSRAGHQLPT 1091
Query: 60 YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWL----THTSENAQH 113
YKT+ L+ N+FR+ V F G+ FVG+P +K+LAE+ AA EA+ WL TH+S + H
Sbjct: 1092 YKTQELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDNTHSSGDIDH 1149
>Medtr8g106630.5 | ATP-dependent RNA helicase DHX36-like protein | HC
| chr8:44998383-45010085 | 20130731
Length = 1172
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGT---NPKSLLQTLLMRAGHSPPN 59
AV+ LVS D C+GRFV+G P+ + + DG N K+ LQT L RAGH P
Sbjct: 1033 AVRLLVSEDNCDGRFVYGHQVL-PQLKKETKSKSGDGAGGDNSKNQLQTFLSRAGHQLPT 1091
Query: 60 YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWL----THTSENAQH 113
YKT+ L+ N+FR+ V F G+ FVG+P +K+LAE+ AA EA+ WL TH+S + H
Sbjct: 1092 YKTQELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDNTHSSGDIDH 1149
>Medtr8g106630.2 | ATP-dependent RNA helicase DHX36-like protein | HC
| chr8:44998383-45010085 | 20130731
Length = 1172
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGT---NPKSLLQTLLMRAGHSPPN 59
AV+ LVS D C+GRFV+G P+ + + DG N K+ LQT L RAGH P
Sbjct: 1033 AVRLLVSEDNCDGRFVYGHQVL-PQLKKETKSKSGDGAGGDNSKNQLQTFLSRAGHQLPT 1091
Query: 60 YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWL----THTSENAQH 113
YKT+ L+ N+FR+ V F G+ FVG+P +K+LAE+ AA EA+ WL TH+S + H
Sbjct: 1092 YKTQELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDNTHSSGDIDH 1149
>Medtr8g106630.4 | ATP-dependent RNA helicase DHX36-like protein | HC
| chr8:44998383-45010085 | 20130731
Length = 1172
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 3 AVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGT---NPKSLLQTLLMRAGHSPPN 59
AV+ LVS D C+GRFV+G P+ + + DG N K+ LQT L RAGH P
Sbjct: 1033 AVRLLVSEDNCDGRFVYGHQVL-PQLKKETKSKSGDGAGGDNSKNQLQTFLSRAGHQLPT 1091
Query: 60 YKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAVEALAWL----THTSENAQH 113
YKT+ L+ N+FR+ V F G+ FVG+P +K+LAE+ AA EA+ WL TH+S + H
Sbjct: 1092 YKTQELRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDNTHSSGDIDH 1149
>Medtr8g045110.1 | ATP-dependent RNA helicase A-like protein | HC |
chr8:17594404-17602720 | 20130731
Length = 630
Score = 73.9 bits (180), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/41 (80%), Positives = 37/41 (90%)
Query: 1 MLAVQELVSGDQCEGRFVFGRASRKPRASNDENKFTKDGTN 41
M AVQEL+SGDQCEGRFV R S+KP+AS+DENKFTKDGTN
Sbjct: 588 MYAVQELISGDQCEGRFVSARDSQKPKASDDENKFTKDGTN 628