Miyakogusa Predicted Gene

Lj0g3v0004189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0004189.1 tr|G7L707|G7L707_MEDTR Vacuolar protein sorting
protein OS=Medicago truncatula GN=MTR_8g044150 PE=4
,83.07,0,EAP30,EAP30; Vps36_ESCRT-II,Vacuolar protein sorting protein
36, GLUE domain; GLUE,Vacuolar protein ,CUFF.275.1
         (447 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g044150.1 | vacuolar protein sorting protein, putative | H...   632   0.0  

>Medtr8g044150.1 | vacuolar protein sorting protein, putative | HC |
           chr8:16916232-16922509 | 20130731
          Length = 442

 Score =  632 bits (1629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/449 (74%), Positives = 352/449 (78%), Gaps = 9/449 (2%)

Query: 1   MAGNCLPAVKLTGSGRPVLLPNEIECFFLSGVDLLCEDEPNSWFPHLKSGXXXXXXXXXX 60
           MAGN LP V LT +GRPVLLPNEIECFFLSGVDLLCEDEPNSWFPHLKSG          
Sbjct: 1   MAGNSLPPVNLTDNGRPVLLPNEIECFFLSGVDLLCEDEPNSWFPHLKSGLLILTTHRLL 60

Query: 61  XXPEPADGGTSSAVHLAA--ISHIFPHKKSLKSVFASPRVRFQVSPSPEGGVAASGSRSV 118
             P+ A   +SSA  +    ISHIFP+KKSLKSVFAS R+RFQVSP        +GSRSV
Sbjct: 61  WLPDTAVASSSSASAVHLSSISHIFPNKKSLKSVFASRRIRFQVSPE-------TGSRSV 113

Query: 119 VATIVVRGKGEFDAFVAKFXXXXXXXXXXXXXSGQXXXXXXXXXXXXXXXXXXIYGRDGT 178
           V T+VVRGKG+FDAFVAKF                                  IY  DGT
Sbjct: 114 VVTVVVRGKGDFDAFVAKFWENWRGRAWEESEKVASSSSNAVAGAGSASSGSGIYSSDGT 173

Query: 179 VRMVGVSGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMRQKLLSGSNSQT 238
           VRMVGVSGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMR KLLSGSNSQT
Sbjct: 174 VRMVGVSGILRKEQEMWESTDKSLQDAFQDLNALMSKAKEMVMLAEKMRLKLLSGSNSQT 233

Query: 239 NATNEEEMGTKEEMQDWLLSVGIISPVTKESAGAMYHQQLSRQLADFVKVPLERAGGIIN 298
           N TN+EEMG+KEEMQ+ LLSVGIISPVTKESAGA+YHQQLSRQLADFVKVPLER+GGIIN
Sbjct: 234 NTTNDEEMGSKEEMQELLLSVGIISPVTKESAGALYHQQLSRQLADFVKVPLERSGGIIN 293

Query: 299 LIDIYCLFNRARGTELISPDDLLQACSLWEKFDVPVVLRKFDRGVMVIQTKSHSDEEVFA 358
           LIDIYCLFNRARGTELISPDDLLQACSLWEKFDVP+VLRKFD GVMVIQ KSHSDEEVF 
Sbjct: 294 LIDIYCLFNRARGTELISPDDLLQACSLWEKFDVPIVLRKFDSGVMVIQNKSHSDEEVFT 353

Query: 359 KIKVLVMKPDALRAGISASDXXXXXXXXXXXXKEHLLSAESKGILCRDISPDGFRFYINL 418
           KIK LVMKPDALRAGIS SD            KEHLLSAESKGILCRD+SPDGFRFYINL
Sbjct: 354 KIKALVMKPDALRAGISPSDAARTLGVAPAMAKEHLLSAESKGILCRDVSPDGFRFYINL 413

Query: 419 FPEIDRDDMHVVKDQGIYASWVSANHAHG 447
           FPEIDRDD+++VKDQGIY SWV A  A G
Sbjct: 414 FPEIDRDDVYLVKDQGIYPSWVRAIPALG 442