Miyakogusa Predicted Gene

Lj0g3v0004109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0004109.1 Non Characterized Hit- tr|G7IG28|G7IG28_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,80.56,0.000000006, ,CUFF.252.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g036070.1 | hypothetical protein | HC | chr2:15304595-1530...    65   2e-11
Medtr2g036080.1 | PPR containing plant-like protein | HC | chr2:...    64   4e-11

>Medtr2g036070.1 | hypothetical protein | HC |
          chr2:15304595-15307390 | 20130731
          Length = 381

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 52 TAGALKRDFEKVHFTCLPEIGEILVNGLTVKRKSHF 87
          TAG LKRDFE+VHFTCLP+IGEI V+GL VKRKS F
Sbjct: 29 TAGTLKRDFEQVHFTCLPDIGEIQVHGLMVKRKSCF 64


>Medtr2g036080.1 | PPR containing plant-like protein | HC |
            chr2:15308501-15315184 | 20130731
          Length = 1388

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 31/36 (86%)

Query: 52   TAGALKRDFEKVHFTCLPEIGEILVNGLTVKRKSHF 87
            T GALKRDF KVHFTCLP+IGEI V+GL VKRKS F
Sbjct: 1235 TTGALKRDFVKVHFTCLPDIGEIQVHGLMVKRKSSF 1270