Miyakogusa Predicted Gene

Lj0g3v0002119.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0002119.3 Non Characterized Hit- tr|I1LKQ8|I1LKQ8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.35313
PE,83.64,7e-19,GTPase activation domain, GAP,Rho GTPase activation
protein; no description,Rho GTPase-activating pr,CUFF.124.3
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g086580.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti...    92   2e-19
Medtr7g104900.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti...    91   4e-19
Medtr5g064420.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti...    90   1e-18
Medtr4g052850.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti...    89   2e-18
Medtr7g107560.1 | Rac GTPase activating protein | HC | chr7:4387...    80   6e-16
Medtr1g089500.1 | Rac GTPase activating protein | HC | chr1:3999...    79   2e-15
Medtr8g026680.1 | Rac GTPase activating protein | HC | chr8:9249...    76   1e-14
Medtr7g081615.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti...    69   2e-12

>Medtr2g086580.1 | PAK-box/P21-Rho-binding domain Rho GTPase
           activating protein | HC | chr2:36405412-36408662 |
           20130731
          Length = 451

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 46/55 (83%)

Query: 32  ATMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           AT+FGVSTESMQLSYD+RGNSVP ILL MQRHLY Q GLQ EGIF IN DN+  E
Sbjct: 115 ATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQEGLQVEGIFRINADNSQEE 169



 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 84  HTEASLLDWAINLMVDVVQEEHLSKMNAHNIAMV 117
           H EA+LLDWAINLM DVV+ E+L+KMNA NIAMV
Sbjct: 231 HAEAALLDWAINLMADVVEHENLNKMNARNIAMV 264


>Medtr7g104900.1 | PAK-box/P21-Rho-binding domain Rho GTPase
           activating protein | HC | chr7:42531591-42525668 |
           20130731
          Length = 477

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/54 (77%), Positives = 47/54 (87%)

Query: 33  TMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           ++FGVSTESMQLS+D RGNSVP ILL MQRHLYAQGGLQAEGIF IN +N+  E
Sbjct: 140 SVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENSQEE 193



 Score = 57.4 bits (137), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 8/70 (11%)

Query: 85  TEASLLDWAINLMVDVVQEEHLSKMNAHNIAMVPVNSVSPGIVGRKMHTYTVLVVFIFVI 144
           TE++LLDWA+NLM DV Q EHL+KMNA NIAMV     +P +     H    L   ++ +
Sbjct: 256 TESALLDWAVNLMADVAQMEHLNKMNARNIAMV----FAPNMT----HMVDPLTALMYAV 307

Query: 145 RLQIIVKILL 154
           ++   +K L+
Sbjct: 308 QVMNFLKTLV 317


>Medtr5g064420.1 | PAK-box/P21-Rho-binding domain Rho GTPase
           activating protein | HC | chr5:27034836-27036920 |
           20130731
          Length = 238

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 45/55 (81%)

Query: 32  ATMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           AT+FGVSTESM+LSYD RGN VP ILL MQ HLYAQGGLQAEGIF IN DN   E
Sbjct: 49  ATVFGVSTESMKLSYDRRGNIVPTILLLMQEHLYAQGGLQAEGIFRINADNRQEE 103



 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 31/34 (91%)

Query: 84  HTEASLLDWAINLMVDVVQEEHLSKMNAHNIAMV 117
           HTEASLL+W INLM DVVQEEHL+KMNA NIAMV
Sbjct: 161 HTEASLLNWTINLMADVVQEEHLNKMNACNIAMV 194


>Medtr4g052850.1 | PAK-box/P21-Rho-binding domain Rho GTPase
           activating protein | HC | chr4:19175348-19178049 |
           20130731
          Length = 363

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 45/55 (81%)

Query: 32  ATMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           AT+FGVSTESM+LSYD RGN VP ILL +Q HLYAQGGLQAEGIF IN DN   E
Sbjct: 134 ATVFGVSTESMKLSYDRRGNIVPTILLLIQEHLYAQGGLQAEGIFRINADNRQEE 188



 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 31/34 (91%)

Query: 84  HTEASLLDWAINLMVDVVQEEHLSKMNAHNIAMV 117
           HTEASLL+W INLM DVVQEEHL+KMNA NIAMV
Sbjct: 250 HTEASLLNWTINLMADVVQEEHLNKMNARNIAMV 283


>Medtr7g107560.1 | Rac GTPase activating protein | HC |
           chr7:43875012-43878185 | 20130731
          Length = 435

 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 43/54 (79%)

Query: 33  TMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           ++FGVS ESMQ SYD++GNSVP ILL MQ  LY+QGGL+AEGIF IN +N   E
Sbjct: 103 SVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEE 156


>Medtr1g089500.1 | Rac GTPase activating protein | HC |
           chr1:39993064-39989777 | 20130731
          Length = 483

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 44/54 (81%)

Query: 33  TMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
           ++FGVS ESMQ SYD++GNSVP IL+ MQ  LY+QGGL+AEGIF IN +N+  E
Sbjct: 110 SVFGVSAESMQCSYDSKGNSVPTILMLMQDRLYSQGGLKAEGIFRINPENSKEE 163


>Medtr8g026680.1 | Rac GTPase activating protein | HC |
           chr8:9249397-9245785 | 20130731
          Length = 492

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 42/51 (82%)

Query: 34  MFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTH 84
           +FGVS +SMQ SYD RGNSVP ILL+MQ+ LY++GGL+AEGIF I  +N+ 
Sbjct: 153 VFGVSAKSMQCSYDDRGNSVPTILLRMQKQLYSEGGLKAEGIFRITAENSQ 203



 Score = 56.2 bits (134), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/33 (72%), Positives = 28/33 (84%)

Query: 85  TEASLLDWAINLMVDVVQEEHLSKMNAHNIAMV 117
           TEA+LLDWAINLM DVV+ E  +KMNA N+AMV
Sbjct: 268 TEAALLDWAINLMADVVENEQFNKMNARNVAMV 300


>Medtr7g081615.1 | PAK-box/P21-Rho-binding domain Rho GTPase
          activating protein | HC | chr7:31295617-31296762 |
          20130731
          Length = 182

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 2/54 (3%)

Query: 33 TMFGVSTESMQLSYDTRGNSVPKILLQMQRHLYAQGGLQAEGIFIINTDNTHTE 86
          ++FGVS ESMQ SYD++GNSVP ILL MQ  LY+QG  + +GIF IN +N   E
Sbjct: 18 SVFGVSVESMQCSYDSKGNSVPAILLLMQERLYSQG--RTKGIFCINLENGEEE 69